Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 0.0e+00 1111.7 540 100.0
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 5.5e-298 1026.9 535 92.9
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 1.6e-297 1025.4 535 93.6
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 3.5e-297 1024.2 561 89.7
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 2.5e-295 1018.1 535 92.0
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 2.7e-273 944.9 536 84.0
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 4.7e-273 944.1 539 82.9
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 5.2e-272 940.6 540 83.7
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 1.5e-271 939.1 540 83.5
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 4.8e-270 934.1 539 83.5
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 6.3e-270 933.7 539 81.4
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 1.1e-269 932.9 536 83.6
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 1.1e-269 932.9 536 81.9
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 7.0e-269 930.2 538 82.3
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.6e-268 929.1 539 82.2
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.3e-267 926.0 538 82.0
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 1.7e-267 925.6 535 81.9
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 2.2e-267 925.2 539 82.4
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 2.2e-267 925.2 544 80.9
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 2.2e-267 925.2 536 81.7
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 7.2e-266 920.2 535 81.7
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 1.2e-265 919.5 542 81.9
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.1e-265 918.7 544 80.5
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 6.1e-265 917.1 535 81.7
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 5.2e-264 914.1 535 81.7
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 8.8e-264 913.3 556 79.5
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 3.3e-263 911.4 539 79.8
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 7.5e-263 910.2 544 79.8
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 1.7e-262 909.1 537 81.4
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 2.8e-262 908.3 535 80.4
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 2.8e-262 908.3 591 75.0
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.7e-262 907.9 570 76.8
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 4.8e-262 907.5 534 81.1
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 8.2e-262 906.7 536 81.0
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 8.2e-262 906.7 535 81.3
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 1.8e-261 905.6 548 79.4
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 1.8e-261 905.6 535 81.1
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.4e-261 905.2 557 77.6
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 2.7e-260 901.7 525 81.7
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 3.5e-260 901.4 535 79.4
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 3.5e-260 901.4 535 79.8
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 1.7e-259 899.0 540 79.8
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 2.5e-258 895.2 541 79.7
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 2.5e-258 895.2 533 80.3
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 2.5e-258 895.2 525 81.1
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 3.2e-258 894.8 539 78.3
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 3.2e-258 894.8 536 79.3
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 4.2e-258 894.4 541 80.8
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 1.2e-257 892.9 535 80.0
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 1.2e-257 892.9 538 80.1
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 1.2e-257 892.9 536 79.1
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 1.6e-257 892.5 525 80.6
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 2.7e-257 891.7 533 80.9
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 3.6e-257 891.3 539 79.2
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 3.6e-257 891.3 537 80.3
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 6.1e-257 890.6 533 80.5
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 8.0e-257 890.2 536 79.3
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 1.0e-256 889.8 535 80.0
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 1.4e-256 889.4 535 79.1
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 2.0e-255 885.6 536 78.9
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 2.0e-255 885.6 543 79.0
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 1.7e-254 882.5 537 80.1
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 1.7e-254 882.5 536 78.5
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 4.8e-254 880.9 534 80.3
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.1e-253 879.8 535 80.0
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 1.1e-253 879.8 572 74.5
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 7.0e-253 877.1 536 78.9
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 2.7e-252 875.2 523 79.9
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.7e-252 875.2 536 79.1
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 2.7e-252 875.2 539 77.7
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 7.7e-252 873.6 503 82.3
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 7.7e-252 873.6 534 78.7
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 1.7e-251 872.5 535 78.9
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 6.5e-251 870.5 536 78.7
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 4.2e-250 867.8 539 76.8
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 7.2e-250 867.1 541 78.9
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 2.8e-249 865.1 520 80.6
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 4.0e-248 861.3 541 76.3
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 8.8e-248 860.1 540 77.2
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 8.8e-248 860.1 540 77.2
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 1.5e-247 859.4 534 77.3
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 2.6e-247 858.6 534 77.3
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 1.7e-246 855.9 539 75.7
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 2.2e-246 855.5 547 76.6
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 4.9e-246 854.4 539 76.3
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 6.3e-246 854.0 541 76.7
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 8.3e-246 853.6 533 76.4
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 8.3e-246 853.6 538 76.8
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 1.1e-245 853.2 538 75.3
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 1.4e-245 852.8 539 75.5
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 9.2e-245 850.1 542 75.1
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 5.0e-243 844.3 469 84.6
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 4.0e-240 834.7 560 74.6
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 2.0e-239 832.4 545 76.0
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 5.7e-239 830.9 560 74.5
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 1.3e-238 829.7 545 76.0
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 3.2e-237 825.1 537 74.3
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 9.2e-237 823.5 564 71.3
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 2.0e-236 822.4 483 79.3
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.5e-234 815.5 550 72.5
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 8.0e-233 810.4 540 72.8
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 1.0e-232 810.1 537 74.1
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 8.3e-230 800.4 537 73.2
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 5.6e-218 761.1 473 75.7
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 1.5e-215 753.1 536 68.3
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 1.3e-214 750.0 529 69.9
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 1.1e-208 730.3 398 83.2
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 1.5e-207 726.5 426 77.7
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 2.6e-207 725.7 474 73.2
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 3.9e-203 711.8 434 77.6
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.3e-193 680.2 511 67.1
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 1.7e-190 669.8 408 78.9
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 1.9e-186 656.4 401 75.6
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 6.3e-177 624.8 332 85.2
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 1.8e-155 553.5 283 89.4
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 3.9e-155 552.4 537 53.3
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 6.7e-155 551.6 401 69.6
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 7.4e-154 548.1 468 56.8
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.3e-150 537.3 339 74.6
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 2.7e-135 486.5 346 67.9
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 8.6e-134 481.5 364 64.0
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 1.8e-131 473.8 453 52.3
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 1.5e-130 470.7 463 51.4
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 4.1e-128 462.6 338 69.5
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 3.6e-108 396.4 270 73.7
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.5e-95 353.2 230 75.7
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 1.7e-89 334.3 181 84.0
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 5.1e-86 322.8 182 83.0
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.9e-77 294.3 172 77.9
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 6.5e-57 226.1 134 76.9
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 2.3e-46 191.0 115 79.1
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 1.7e-41 174.9 102 78.4
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 1.8e-35 154.8 81 87.7
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 9.1e-27 125.9 68 80.9
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 2.6e-21 107.8 56 83.9
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 1.1e-19 102.4 58 81.0
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 2.4e-19 101.3 62 74.2
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 2.4e-19 101.3 62 74.2
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 2.0e-18 98.2 50 80.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 6.8e-14 83.2 75 60.0
Sed0024086 Sechium edule HOM05D001054 ORTHO05D373058 1.6e-07 62.0 76 52.6


User provided reference genes

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