Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 7.8e-194 680.2 336 100.0
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 1.4e-129 466.8 321 75.4
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 1.5e-123 446.8 336 69.9
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.4e-105 387.1 323 65.3
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.3e-95 354.0 294 65.6
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 8.9e-73 278.1 356 44.7
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 2.0e-72 276.9 358 45.5
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 8.1e-66 255.0 321 44.9
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 4.0e-65 252.7 336 44.6
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 3.4e-64 249.6 336 44.9
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.1e-62 244.6 300 44.0
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 7.1e-62 241.9 336 41.1
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.1e-62 241.9 314 44.3
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 9.3e-62 241.5 330 42.7
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 3.0e-60 236.5 360 40.3
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 5.1e-60 235.7 339 41.3
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.6e-60 235.3 311 43.4
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 1.9e-59 233.8 335 41.8
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 3.3e-59 233.0 319 40.8
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.3e-59 233.0 315 43.5
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 4.3e-59 232.6 347 40.9
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.6e-59 231.5 315 43.5
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.6e-58 230.7 308 43.2
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.0e-57 226.1 310 42.9
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 9.0e-57 224.9 306 42.5
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.5e-56 224.2 332 41.0
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 2.0e-56 223.8 303 42.2
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.9e-55 219.9 316 42.4
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.9e-55 219.2 306 42.5
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 1.4e-54 217.6 330 40.0
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.9e-54 217.2 305 42.6
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.9e-54 217.2 305 42.6
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 2.4e-54 216.9 307 42.7
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 7.9e-53 211.8 314 42.4
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 7.9e-53 211.8 326 40.5
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 7.9e-53 211.8 312 40.4
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.0e-52 211.5 322 39.8
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.8e-52 210.7 306 42.5
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.1e-51 208.0 339 39.2
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.9e-51 207.2 319 39.2
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.3e-51 206.1 301 40.2
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 9.6e-51 204.9 330 37.6
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.1e-50 203.8 320 40.3
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 2.8e-50 203.4 329 39.8
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 3.7e-50 203.0 316 39.2
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 2.4e-49 200.3 238 45.0
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 4.0e-49 199.5 322 40.7
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 2.0e-48 197.2 258 43.0
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.0e-47 194.9 315 40.0
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.3e-47 194.5 309 39.8
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.3e-47 194.5 342 39.5
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 1.7e-47 194.1 227 48.5
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 2.2e-47 193.7 314 37.6
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 8.4e-47 191.8 322 39.8
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.9e-46 190.7 370 34.9
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.2e-46 189.9 234 45.3
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 4.2e-46 189.5 316 38.0
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 9.3e-46 188.3 246 43.5
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 9.3e-46 188.3 238 42.9
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.7e-45 186.8 302 39.4
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.0e-44 184.9 341 37.0
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.3e-44 184.5 309 36.9
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 5.1e-44 182.6 362 33.7
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.7e-44 182.2 306 37.9
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 8.7e-44 181.8 354 35.6
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.5e-43 181.0 231 42.9
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.5e-43 181.0 230 41.3
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.7e-43 179.1 228 43.0
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 5.7e-43 179.1 313 37.1
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.6e-42 177.6 236 41.5
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 2.8e-42 176.8 374 37.2
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 3.7e-42 176.4 321 38.0
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 6.2e-42 175.6 309 37.2
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 6.2e-42 175.6 251 38.6
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.4e-41 174.5 341 34.9
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 5.3e-41 172.6 304 35.9
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.2e-40 171.4 321 36.4
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 7.6e-40 168.7 310 36.8
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.7e-39 167.5 298 37.2
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.1e-38 164.9 347 35.2
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 1.1e-38 164.9 310 36.1
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-38 164.9 280 37.9
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.2e-38 163.3 243 39.5
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 4.2e-38 162.9 302 34.1
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 5.5e-38 162.5 302 34.4
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 7.1e-38 162.2 309 35.0
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 9.3e-38 161.8 237 44.3
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 4.6e-37 159.5 240 41.7
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 4.6e-37 159.5 286 37.1
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 6.1e-37 159.1 309 33.7
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 6.1e-37 159.1 309 33.7
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 6.1e-37 159.1 303 36.0
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 6.1e-37 159.1 312 36.2
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 2.5e-35 153.7 325 35.1
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 3.3e-35 153.3 309 33.0
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.3e-34 151.4 249 36.9
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 6.3e-34 149.1 306 33.3
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 6.3e-34 149.1 301 34.2
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 2.4e-33 147.1 233 36.5
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 9.0e-33 145.2 163 44.8
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 2.6e-32 143.7 303 33.3
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 5.9e-32 142.5 237 34.2
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 1.0e-31 141.7 267 35.2
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 1.7e-31 141.0 229 38.4
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 2.2e-31 140.6 267 35.6
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 3.8e-31 139.8 303 32.7
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 5.0e-31 139.4 155 46.5
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 3.2e-30 136.7 166 44.6
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 9.4e-30 135.2 303 30.0
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 8.8e-28 128.6 239 36.0
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.3e-26 124.8 174 40.8
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 8.2e-26 122.1 290 32.8
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.9e-23 113.6 292 31.8
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.4e-22 108.6 160 40.0
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 1.6e-21 107.8 154 40.9
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 4.7e-21 106.3 252 31.0
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 7.9e-21 105.5 117 48.7
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 3.7e-18 96.7 272 32.0
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.8e-17 94.4 231 29.0
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 3.5e-16 90.1 241 31.5
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 1.3e-15 88.2 191 33.5
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 2.9e-15 87.0 149 38.3
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 6.5e-15 85.9 78 53.8
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.5e-14 84.7 226 30.5
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 9.4e-14 82.0 386 25.1
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 1.6e-13 81.3 109 44.0
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.0e-12 78.6 240 27.5
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 3.0e-12 77.0 169 33.1
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 3.0e-12 77.0 246 27.2
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 3.9e-12 76.6 218 30.3
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 1.1e-11 75.1 119 37.8
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 4.4e-11 73.2 161 36.6
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 7.4e-11 72.4 108 38.0
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 1.7e-10 71.2 313 27.2
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 4.8e-10 69.7 109 38.5
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.8e-10 69.7 145 32.4
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 4.1e-09 66.6 236 28.8
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.1e-09 65.5 342 24.0
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.6e-08 64.7 152 28.3
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 7.7e-08 62.4 113 32.7
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.9e-07 60.5 194 26.8
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 8.5e-07 58.9 276 25.7
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 4.2e-06 56.6 245 27.8
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 9.4e-06 55.5 239 26.4


User provided reference genes

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