Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1333.5 648 100.0
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1279.6 647 95.5
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1276.2 648 95.2
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1276.2 650 94.9
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1197.2 648 87.7
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1196.8 648 87.5
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1196.4 645 88.5
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1196.0 642 89.1
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1196.0 645 88.7
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1194.9 648 88.1
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1194.9 648 88.1
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1194.5 650 88.3
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1194.1 648 88.0
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1193.7 647 87.9
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1193.3 649 87.5
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1193.3 646 88.7
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1192.9 648 87.7
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1192.9 648 87.8
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1191.4 650 89.1
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1191.0 648 87.5
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1189.5 649 87.4
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1188.7 648 87.7
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1187.2 645 88.4
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1186.8 645 88.1
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1186.8 650 86.9
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1186.0 645 87.8
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 652 87.4
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1183.3 652 87.1
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1183.3 649 88.3
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 649 87.4
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 648 86.9
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 649 86.7
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 651 86.9
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 649 86.4
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 652 87.0
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 649 86.9
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1177.2 645 87.6
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 652 86.7
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 643 87.1
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 645 87.1
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 646 86.5
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 649 86.3
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 649 86.3
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1174.1 648 86.6
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 650 86.3
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1170.6 649 86.3
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 644 87.1
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 645 86.0
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 640 87.8
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 642 85.8
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 646 85.9
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1163.7 648 85.5
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 651 84.8
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 649 85.4
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 651 87.1
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 647 85.9
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1161.4 646 86.2
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 643 86.2
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 643 86.2
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1157.5 651 86.3
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 646 85.1
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 645 85.9
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 646 84.8
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 649 85.5
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 650 84.5
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1151.0 647 85.2
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1151.0 648 84.7
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1151.0 646 85.1
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1150.2 647 84.7
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1149.8 602 90.5
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 650 84.8
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1144.8 642 84.1
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1144.8 644 84.6
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1144.8 648 84.3
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 653 83.9
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 653 83.9
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 647 83.9
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1140.6 642 85.0
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 646 83.7
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1138.6 653 83.9
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1138.3 646 83.4
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 653 83.6
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 646 83.1
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 646 83.1
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1137.1 653 83.8
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 605 88.8
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 642 83.5
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1135.2 642 84.3
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 646 83.3
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1132.5 649 84.3
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1132.5 646 82.8
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1127.5 647 83.0
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1127.1 650 83.4
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1125.9 647 83.2
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1120.1 714 76.2
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1119.8 647 83.5
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1103.2 641 81.9
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1102.8 642 84.1
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1101.7 602 86.2
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1101.7 634 82.8
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1079.7 594 87.0
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1078.9 649 79.0
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 1.7e-309 1065.4 646 79.1
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 1.7e-309 1065.4 645 80.6
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 3.8e-306 1054.3 674 76.4
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 6.8e-303 1043.5 642 78.8
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 3.1e-300 1034.6 540 90.0
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 2.0e-299 1031.9 620 80.2
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 7.7e-299 1030.0 575 84.2
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 3.8e-298 1027.7 641 76.6
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 1.2e-291 1006.1 612 80.6
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.6e-291 1005.7 608 78.6
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 6.6e-290 1000.3 553 84.3
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 1.0e-250 870.2 474 86.7
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 2.5e-228 795.8 532 71.8
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 1.2e-201 707.2 403 85.1
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 3.5e-190 669.1 393 81.4
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 2.5e-188 662.9 581 58.7
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 1.6e-147 527.3 267 92.9
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.9e-128 462.6 578 46.4
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 1.2e-73 282.0 220 62.7
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.5e-68 265.0 125 94.4
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 2.8e-46 191.0 108 84.3
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 6.8e-45 186.4 151 62.3
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 7.8e-41 172.9 97 85.6
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 8.1e-38 162.9 150 59.3
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.5e-20 105.5 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.7e-19 102.1 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 5.1e-08 63.9 32 93.8


User provided reference genes

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