Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 1.2e-308 1062.4 540 100.0
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 3.3e-263 911.4 522 89.1
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 4.4e-255 884.4 513 87.1
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.4e-248 862.8 510 85.7
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 9.9e-223 776.9 495 78.6
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 2.1e-220 769.2 530 73.8
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 5.1e-219 764.6 530 73.4
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 4.3e-218 761.5 523 73.0
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 2.1e-217 759.2 499 76.4
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 2.8e-217 758.8 500 76.8
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.4e-216 756.5 498 77.9
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 4.4e-215 751.5 530 72.6
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 5.8e-215 751.1 492 76.4
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 2.2e-214 749.2 511 73.0
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 2.9e-214 748.8 494 75.7
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 1.4e-213 746.5 496 75.6
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 7.1e-213 744.2 499 74.5
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 9.2e-213 743.8 494 74.5
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.2e-212 743.4 494 75.3
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 3.5e-212 741.9 517 72.7
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.0e-212 741.1 494 75.3
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 7.8e-212 740.7 489 75.3
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 1.0e-211 740.3 494 74.9
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 5.1e-211 738.0 516 71.1
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 6.6e-211 737.6 494 74.5
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 6.6e-211 737.6 494 73.9
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 1.5e-210 736.5 511 71.6
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.5e-210 736.5 503 73.0
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 1.5e-210 736.5 514 73.3
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.9e-210 736.1 503 73.0
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 4.3e-210 734.9 494 74.5
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 5.6e-210 734.6 503 72.8
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 7.3e-210 734.2 497 74.4
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 2.1e-209 732.6 520 70.8
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.6e-209 731.9 524 71.4
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 3.6e-209 731.9 520 72.3
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 4.7e-209 731.5 496 73.4
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 1.8e-208 729.6 494 73.3
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 1.2e-207 726.9 517 72.0
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 2.6e-207 725.7 516 72.5
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 5.8e-207 724.5 482 76.1
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 5.8e-207 724.5 534 69.9
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 5.8e-207 724.5 497 73.8
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 4.9e-206 721.5 530 70.6
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 6.4e-206 721.1 495 73.3
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 8.4e-206 720.7 484 74.6
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 1.4e-205 719.9 510 71.4
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.4e-205 719.2 496 73.6
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 9.3e-205 717.2 530 69.1
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 2.1e-204 716.1 505 71.7
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 2.7e-204 715.7 516 70.7
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 3.5e-204 715.3 510 71.6
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 3.5e-204 715.3 508 71.7
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 1.0e-203 713.8 499 71.9
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 1.0e-203 713.8 549 68.9
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 2.3e-203 712.6 499 72.1
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 3.0e-203 712.2 490 74.1
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 6.6e-203 711.1 540 67.8
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 2.5e-202 709.1 499 71.9
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 3.3e-202 708.8 465 75.5
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 5.6e-202 708.0 539 69.0
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 5.6e-202 708.0 499 71.9
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 1.3e-201 706.8 514 68.9
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 2.8e-201 705.7 499 71.9
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 1.8e-200 703.0 501 72.7
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 4.0e-200 701.8 510 70.8
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 9.0e-200 700.7 491 72.1
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 1.5e-199 699.9 491 72.1
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 2.0e-199 699.5 523 69.6
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 2.6e-199 699.1 492 72.2
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 7.6e-199 697.6 491 71.7
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 9.9e-199 697.2 491 71.7
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 9.9e-199 697.2 482 71.8
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 1.3e-198 696.8 519 69.2
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 2.9e-198 695.7 491 71.9
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 1.1e-197 693.7 491 71.5
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 1.9e-197 693.0 491 71.5
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 4.2e-197 691.8 491 71.5
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 9.3e-197 690.6 491 71.1
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 9.3e-197 690.6 495 71.5
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 2.1e-196 689.5 494 70.9
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.9e-195 685.3 488 71.9
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 3.9e-195 685.3 511 68.1
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 8.7e-195 684.1 488 70.9
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 8.7e-195 684.1 502 67.9
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 7.4e-194 681.0 498 70.5
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 8.1e-193 677.6 494 69.8
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 2.4e-192 676.0 599 63.1
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 9.9e-191 670.6 492 67.9
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.8e-187 659.8 486 68.7
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.8e-187 659.8 486 70.2
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 5.1e-187 658.3 473 70.8
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 9.6e-186 654.1 438 74.4
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 1.2e-183 647.1 490 67.6
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 4.2e-181 638.6 506 66.0
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 3.4e-175 619.0 525 61.3
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.0e-171 607.4 656 52.7
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.1e-170 604.0 496 62.7
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.1e-164 581.6 386 74.4
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 6.1e-164 581.6 494 60.5
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 6.3e-161 571.6 467 64.2
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 2.1e-156 556.6 503 56.7
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 3.0e-155 552.7 493 58.8
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 9.4e-149 531.2 507 55.4
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 8.3e-137 491.5 344 74.7
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 1.8e-128 463.8 410 58.3
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.7e-127 459.9 371 68.5
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 2.6e-106 390.2 544 44.5
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 3.9e-102 376.3 268 70.1
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.5e-101 373.6 371 58.8
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 4.0e-99 366.3 281 67.3
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 6.7e-78 295.8 288 57.3
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 2.2e-73 280.8 173 77.5
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.5e-72 276.2 460 41.1
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 7.1e-64 249.2 189 66.1
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 4.6e-63 246.5 158 77.2
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.4e-56 222.2 142 70.4
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 2.0e-53 214.5 158 69.0
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 1.5e-50 204.9 223 48.4
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 3.6e-47 193.7 166 65.7
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 7.9e-47 192.6 136 75.7
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 1.7e-44 184.9 121 71.9
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 6.3e-44 183.0 174 58.6
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 1.4e-43 181.8 145 62.8
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.5e-37 161.8 99 82.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.5e-37 161.8 99 82.8
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 1.1e-32 145.6 115 64.3
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 6.1e-31 139.8 226 38.5
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.0e-31 139.4 297 35.7
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.0e-30 137.5 156 49.4
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 5.7e-29 133.3 119 64.7
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 8.8e-22 109.4 127 47.2
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.2e-18 99.0 62 75.8
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.7e-18 96.3 74 70.3
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 5.5e-16 90.1 223 31.4
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 3.6e-15 87.4 138 39.1
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.3e-12 79.0 50 80.0
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.7e-12 77.4 65 64.6
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 1.2e-07 62.4 59 49.2
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 3.6e-07 60.8 74 45.9


User provided reference genes

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