Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 8.3e-123 443.7 227 100.0
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 3.2e-98 362.1 227 82.4
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 4.9e-91 338.2 208 84.1
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 7.9e-81 304.3 233 69.1
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 7.4e-79 297.7 229 65.9
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.4e-77 293.5 230 65.7
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.8e-77 293.1 229 64.6
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.8e-77 293.1 229 64.2
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 5.3e-77 291.6 231 65.8
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.0e-77 290.8 229 64.6
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 2.0e-76 289.7 231 64.1
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 5.8e-76 288.1 229 63.3
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.7e-75 286.6 229 63.8
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 2.2e-75 286.2 232 66.4
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.4e-74 283.5 228 65.4
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.9e-74 283.1 231 64.5
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 2.5e-74 282.7 232 65.9
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 3.2e-74 282.3 232 64.7
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 3.2e-74 282.3 231 64.5
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 7.1e-74 281.2 239 64.4
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 9.3e-74 280.8 231 65.8
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 9.3e-74 280.8 231 64.1
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.2e-73 280.4 231 65.4
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.2e-73 280.4 231 62.8
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 6.0e-73 278.1 231 62.8
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 7.9e-73 277.7 231 64.5
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.0e-72 277.3 234 64.1
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 5.1e-72 275.0 227 64.8
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 5.1e-72 275.0 231 64.1
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 5.1e-72 275.0 231 64.9
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 8.7e-72 274.2 231 62.8
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.9e-71 273.1 227 65.2
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.9e-71 273.1 231 62.3
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.9e-71 273.1 231 62.8
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 3.3e-71 272.3 229 64.6
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.3e-71 271.9 231 63.6
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 7.4e-71 271.2 234 63.7
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 1.6e-70 270.0 231 64.1
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 2.1e-70 269.6 231 60.6
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 3.7e-70 268.9 228 63.6
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.8e-69 266.5 227 61.2
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 2.4e-69 266.2 235 62.1
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 2.4e-69 266.2 235 62.1
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 5.3e-69 265.0 228 65.4
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 2.6e-68 262.7 228 60.5
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.0e-67 260.8 206 66.0
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.3e-67 260.4 233 61.4
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 1.7e-67 260.0 232 62.1
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.7e-67 260.0 236 58.1
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.7e-67 260.0 235 60.4
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 2.2e-67 259.6 228 60.5
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 2.2e-67 259.6 236 58.9
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 3.8e-67 258.8 227 60.8
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 5.0e-67 258.5 233 60.9
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 5.0e-67 258.5 235 59.6
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 8.4e-67 257.7 233 60.1
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 8.4e-67 257.7 236 58.9
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 8.4e-67 257.7 227 59.9
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.4e-66 256.9 229 59.0
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 2.5e-66 256.1 236 58.5
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 2.5e-66 256.1 233 60.1
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 1.2e-65 253.8 236 58.1
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 1.6e-65 253.4 227 57.3
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 1.6e-65 253.4 236 58.1
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.6e-65 253.4 238 59.2
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.1e-65 253.1 233 59.2
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 3.5e-65 252.3 204 65.2
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.0e-64 250.8 236 58.5
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 1.8e-64 250.0 229 62.0
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 2.3e-64 249.6 227 60.4
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 3.0e-64 249.2 237 55.7
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 6.7e-64 248.1 273 53.5
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 8.7e-64 247.7 236 59.3
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 9.7e-63 244.2 237 57.4
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.3e-62 243.8 233 57.5
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 3.1e-61 239.2 209 59.3
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 4.1e-61 238.8 264 52.3
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 4.1e-61 238.8 234 55.6
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 6.9e-61 238.0 202 60.9
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.2e-60 237.3 236 56.8
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 3.4e-60 235.7 227 56.4
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.7e-59 233.4 199 59.8
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 2.9e-59 232.6 263 52.5
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 5.0e-59 231.9 218 57.3
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 6.5e-59 231.5 222 56.3
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.5e-59 231.1 229 56.3
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 5.1e-56 221.9 204 57.4
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 2.5e-55 219.5 215 57.7
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 4.3e-55 218.8 232 55.6
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 5.7e-55 218.4 231 55.8
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.7e-54 216.9 227 53.7
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 4.8e-54 215.3 219 56.2
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 6.3e-54 214.9 133 75.9
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.8e-53 213.4 147 70.7
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 4.1e-53 212.2 233 53.6
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.2e-52 210.7 227 50.7
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 5.9e-52 208.4 188 58.0
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 6.5e-51 204.9 227 49.3
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.6e-49 200.3 196 55.1
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 2.3e-48 196.4 206 55.3
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 3.0e-48 196.1 226 52.2
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 3.0e-48 196.1 120 78.3
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.1e-45 187.6 253 44.7
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.5e-44 183.7 179 60.3
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 3.5e-44 182.6 207 52.2
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.5e-42 177.2 122 67.2
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 4.2e-42 175.6 96 80.2
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 5.5e-42 175.3 179 57.5
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 4.7e-41 172.2 210 46.7
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 6.1e-41 171.8 220 50.5
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 2.3e-40 169.9 184 54.9
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 7.5e-39 164.9 266 41.7
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 7.5e-39 164.9 177 54.2
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.7e-38 162.5 181 51.4
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 3.7e-38 162.5 256 41.4
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 3.6e-33 146.0 195 47.7
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 6.8e-32 141.7 172 50.6
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.0e-24 117.9 79 72.2
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 2.4e-21 106.7 68 76.5
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 3.1e-21 106.3 57 80.7
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 3.1e-21 106.3 174 42.0
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 5.4e-21 105.5 128 48.4
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.2e-17 94.4 49 87.8
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 4.7e-17 92.4 67 56.7
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 2.0e-15 87.0 70 62.9
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.5e-15 85.1 71 63.4
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.7e-14 84.0 50 68.0
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.4e-13 80.9 46 84.8
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 5.4e-13 79.0 56 73.2
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.2e-12 77.8 60 70.0
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.3e-11 74.3 46 80.4
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.7e-11 73.9 46 80.4
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.9e-11 72.8 46 78.3
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 3.9e-11 72.8 46 76.1
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.9e-10 70.5 43 79.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.3e-10 69.3 43 79.1
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.1e-08 63.2 66 53.0
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 3.1e-08 63.2 45 68.9
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 8.9e-08 61.6 92 43.5
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 7.5e-07 58.5 29 86.2


User provided reference genes

Program Settings