Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 0.0e+00 1297.0 666 100.0
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 5.2e-290 1000.7 668 78.7
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 8.0e-283 976.9 668 77.1
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 4.1e-279 964.5 668 76.6
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 6.5e-184 648.3 668 54.2
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 7.2e-183 644.8 666 54.1
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.7e-179 633.6 675 53.6
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 5.0e-176 622.1 673 52.3
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 6.1e-174 615.1 672 51.8
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 8.8e-173 611.3 674 51.5
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 3.5e-169 599.4 722 47.6
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 5.0e-168 595.5 676 51.8
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.1e-167 594.3 669 50.2
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 3.2e-167 592.8 664 52.3
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 7.2e-167 591.7 738 46.7
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.3e-163 580.9 715 46.9
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 3.1e-162 576.2 718 47.6
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 7.0e-162 575.1 741 46.7
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.0e-160 571.2 716 46.2
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 3.3e-159 566.2 672 47.8
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 3.3e-159 566.2 710 48.2
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 4.3e-159 565.8 719 46.3
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 5.6e-159 565.5 655 49.6
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 1.2e-158 564.3 724 47.0
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 4.7e-158 562.4 738 46.2
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 1.0e-157 561.2 679 49.3
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 2.3e-157 560.1 674 49.1
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 3.4e-156 556.2 672 47.2
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 3.7e-155 552.7 739 46.1
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.8e-154 550.4 721 45.5
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.8e-154 550.4 670 47.9
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 2.4e-154 550.1 723 45.1
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 3.5e-153 546.2 717 46.3
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 4.6e-153 545.8 715 44.8
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.0e-152 544.7 701 46.8
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.0e-152 544.7 721 45.1
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 1.0e-152 544.7 670 49.0
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.3e-152 544.3 712 45.9
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 7.3e-151 538.5 738 45.9
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 1.6e-150 537.3 641 49.8
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 2.1e-150 537.0 724 45.3
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 3.6e-150 536.2 671 46.9
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.1e-149 534.6 695 45.9
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 2.6e-148 530.0 722 45.0
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 5.8e-148 528.9 673 46.5
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 7.5e-148 528.5 710 44.8
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 3.7e-147 526.2 673 47.0
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.1e-146 524.6 720 44.7
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.1e-146 524.6 674 46.7
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 5.4e-146 522.3 660 45.8
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 7.0e-146 521.9 729 43.8
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 7.0e-146 521.9 674 45.7
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 2.7e-145 520.0 712 44.2
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 3.5e-145 519.6 672 45.7
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 1.0e-144 518.1 717 43.8
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.3e-144 517.7 773 43.2
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.9e-144 516.2 796 41.3
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.1e-143 514.6 739 43.2
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 5.6e-143 512.3 726 45.6
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.2e-142 511.1 754 42.2
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.2e-142 511.1 724 43.8
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 4.7e-142 509.2 672 45.5
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 2.3e-141 506.9 670 44.5
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 3.1e-141 506.5 721 43.6
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.0e-140 503.8 674 46.1
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.3e-139 501.1 775 41.8
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.3e-139 501.1 576 50.7
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.4e-138 497.7 710 43.8
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 5.4e-138 495.7 660 45.8
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 7.1e-138 495.4 673 44.0
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 9.2e-138 495.0 673 44.1
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 1.4e-133 481.1 727 42.4
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.2e-132 478.0 727 42.1
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.4e-132 476.5 663 43.1
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 8.4e-131 471.9 668 42.8
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.6e-129 467.6 722 40.6
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 2.3e-128 463.8 748 41.8
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.0e-128 463.4 726 41.7
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.4e-124 449.5 678 40.6
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 7.6e-124 448.7 742 39.6
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 3.8e-123 446.4 743 40.2
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 4.2e-122 443.0 742 39.8
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 9.3e-122 441.8 687 41.3
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 2.7e-121 440.3 766 40.1
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 2.3e-120 437.2 663 41.9
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 7.3e-119 432.2 767 38.6
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.4e-117 427.9 691 40.5
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.5e-116 422.9 704 40.8
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.3e-115 421.4 666 40.1
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 3.8e-115 419.9 633 43.0
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 6.0e-113 412.5 859 35.5
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.8e-109 401.0 704 39.2
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 2.4e-109 400.6 618 40.1
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 3.5e-105 386.7 664 39.2
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 5.6e-103 379.4 826 35.2
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 2.4e-101 374.0 829 35.5
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 1.6e-97 361.3 857 33.8
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.6e-97 361.3 668 37.4
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.0e-96 358.6 853 34.1
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 4.3e-95 353.2 509 45.4
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 4.1e-93 346.7 729 35.5
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 3.2e-90 337.0 478 42.5
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 1.4e-88 331.6 830 34.1
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 9.7e-79 298.9 684 35.2
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 2.2e-78 297.7 518 39.2
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 2.2e-75 287.7 677 33.5
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.3e-72 277.7 671 32.8
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 2.9e-67 260.8 624 31.6
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 6.1e-65 253.1 235 57.4
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 6.7e-64 249.6 722 28.7
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 6.3e-62 243.0 271 49.1
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.2e-59 234.6 672 30.8
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 9.1e-53 212.6 196 56.6
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 3.5e-52 210.7 664 28.0
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 7.2e-50 203.0 890 25.3
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 9.5e-50 202.6 322 40.7
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.8e-48 198.4 643 30.5
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.3e-46 192.2 677 27.3
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.7e-41 173.7 261 39.5
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 4.6e-36 157.1 246 38.2
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 6.6e-35 153.3 420 26.2
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 8.6e-35 152.9 176 45.5
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 8.6e-35 152.9 176 45.5
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.1e-34 152.5 128 59.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 1.5e-31 142.1 130 59.2
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 2.2e-22 111.7 239 33.9
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 4.6e-20 104.0 82 63.4
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.7e-19 102.1 96 52.1
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.1e-16 91.3 103 46.6
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.2e-15 89.4 110 44.5
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 2.2e-14 85.1 101 44.6
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.8e-09 68.2 164 36.6
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 6.9e-08 63.5 51 64.7


User provided reference genes

Program Settings