Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 0.0e+00 1931.0 981 100.0
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 0.0e+00 1534.2 976 81.0
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 0.0e+00 1506.1 981 79.6
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 0.0e+00 1423.3 936 78.2
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.1e-300 1035.8 1001 57.1
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 9.9e-298 1026.9 995 56.7
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 6.0e-295 1017.7 993 56.6
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 3.9e-294 1015.0 1058 54.5
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 2.2e-276 956.1 994 54.2
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 7.2e-272 941.0 977 54.4
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 1.5e-266 923.3 960 55.5
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 2.6e-266 922.5 1004 53.1
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 1.0e-265 920.6 1004 53.4
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 2.1e-263 912.9 1011 52.7
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 5.1e-262 908.3 906 54.5
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 3.3e-261 905.6 974 52.8
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 3.5e-258 895.6 862 56.4
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.3e-257 893.6 867 57.1
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 3.6e-255 885.6 975 52.5
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 3.6e-255 885.6 963 52.9
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 3.3e-253 879.0 1014 50.6
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 7.4e-253 877.9 996 51.5
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 7.4e-253 877.9 992 51.2
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.7e-252 876.7 867 55.9
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 2.4e-251 872.8 989 51.2
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 3.1e-251 872.5 967 53.3
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 3.1e-251 872.5 974 51.1
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 4.1e-251 872.1 952 52.3
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 5.3e-251 871.7 867 56.1
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 5.3e-251 871.7 990 51.2
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 5.3e-251 871.7 998 50.2
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 2.0e-250 869.8 977 51.6
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 3.8e-249 865.5 1021 50.2
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 3.8e-249 865.5 974 52.3
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 5.5e-248 861.7 1006 51.7
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 9.4e-248 860.9 978 52.5
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 4.7e-247 858.6 993 50.7
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 4.7e-247 858.6 999 50.2
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 3.4e-245 852.4 1002 50.6
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 7.5e-245 851.3 1005 49.2
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 3.7e-244 849.0 984 50.4
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 8.3e-244 847.8 997 49.4
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 5.0e-241 838.6 977 50.6
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 1.5e-240 837.0 993 49.6
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 1.9e-240 836.6 1000 48.8
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 4.2e-240 835.5 997 49.7
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 4.2e-240 835.5 1004 48.9
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 1.6e-239 833.6 1004 48.5
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 2.1e-239 833.2 996 49.7
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 2.7e-239 832.8 971 50.5
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 4.4e-237 825.5 996 49.8
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 1.2e-234 817.4 1010 49.5
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.6e-234 817.0 865 53.2
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.9e-233 812.8 970 48.6
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 2.5e-232 809.7 1002 48.9
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 5.5e-232 808.5 1007 47.4
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 4.7e-231 805.4 971 49.3
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 1.4e-230 803.9 882 51.9
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 2.0e-229 800.0 1003 46.9
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 1.4e-227 793.9 891 50.8
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 1.8e-227 793.5 950 48.5
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 2.4e-227 793.1 882 51.6
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 7.0e-227 791.6 970 48.6
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 2.7e-226 789.6 994 47.3
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.2e-221 774.2 971 46.9
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 5.8e-221 771.9 891 49.8
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 3.7e-220 769.2 739 56.2
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 4.9e-220 768.8 981 47.2
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.1e-219 767.7 895 49.3
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 3.5e-218 762.7 922 47.7
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 1.7e-217 760.4 914 47.9
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 8.6e-217 758.1 979 45.8
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 1.7e-212 743.8 715 55.5
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 3.0e-209 733.0 968 46.1
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 3.3e-208 729.6 922 47.2
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 4.3e-208 729.2 960 45.3
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 7.3e-208 728.4 968 45.4
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 1.8e-206 723.8 1004 44.6
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.7e-204 717.2 932 46.0
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 3.5e-202 709.5 888 48.3
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 7.8e-202 708.4 967 44.6
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 3.0e-201 706.4 965 44.8
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.5e-200 703.4 987 44.5
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 2.5e-200 703.4 869 47.1
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 4.3e-200 702.6 919 46.8
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.2e-197 694.5 922 45.0
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 9.9e-197 691.4 922 44.8
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 3.5e-194 682.9 980 43.2
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 1.7e-193 680.6 967 43.5
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 5.1e-193 679.1 743 51.8
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 1.2e-189 667.9 1007 42.7
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 3.4e-189 666.4 905 43.9
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 1.9e-187 660.6 1012 41.9
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 1.2e-186 657.9 690 52.9
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 1.3e-185 654.4 904 43.5
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 1.0e-177 628.2 597 55.8
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 8.7e-177 625.2 948 41.5
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 4.3e-176 622.9 876 44.5
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 7.4e-176 622.1 712 50.3
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.5e-168 597.8 622 52.3
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 9.0e-158 562.0 726 47.7
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 4.4e-144 516.5 859 39.5
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 7.7e-141 505.8 867 39.0
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 2.9e-140 503.8 976 35.2
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 1.5e-139 501.5 1083 33.9
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 8.5e-132 475.7 481 55.3
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 1.2e-128 465.3 835 38.1
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 3.0e-108 397.5 1054 30.6
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 2.4e-94 351.3 350 53.4
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 4.5e-64 250.8 945 26.7
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 8.2e-50 203.4 473 30.9
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 5.1e-44 184.1 290 42.1
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 3.1e-41 174.9 466 28.3
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 1.3e-34 152.9 252 33.3
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 4.7e-29 134.4 135 51.9
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 7.0e-25 120.6 292 29.1
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 5.5e-22 110.9 274 26.6
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 5.2e-20 104.4 189 30.2
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 1.5e-19 102.8 202 36.1
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 4.4e-19 101.3 183 42.1
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 8.5e-15 87.0 85 55.3
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 6.8e-12 77.4 110 43.6
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 1.9e-06 59.3 112 34.8


User provided reference genes

Program Settings