Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 0.0e+00 1301.2 652 100.0
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 0.0e+00 1118.6 652 86.0
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 3.9e-306 1054.3 683 80.8
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 9.3e-252 873.6 669 66.1
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 9.3e-252 873.6 670 67.6
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 5.1e-250 867.8 671 66.6
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.6e-243 846.3 685 64.4
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 7.9e-243 844.0 658 66.1
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 2.0e-241 839.3 670 64.8
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 2.0e-241 839.3 662 65.0
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 2.5e-241 839.0 652 65.6
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 2.2e-240 835.9 667 63.9
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 3.7e-240 835.1 676 63.8
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 1.2e-238 830.1 650 64.5
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 1.2e-238 830.1 668 64.1
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 3.6e-235 818.5 673 62.4
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 4.7e-235 818.1 669 64.4
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 1.0e-234 817.0 672 62.1
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 2.4e-231 805.8 481 84.2
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 5.9e-230 801.2 662 63.1
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 1.3e-229 800.0 665 62.6
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 1.9e-228 796.2 644 63.4
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 1.2e-227 793.5 651 62.2
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.5e-225 786.6 707 58.8
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 2.6e-225 785.8 644 62.7
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 2.6e-225 785.8 674 61.7
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.3e-224 783.5 697 59.7
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.3e-224 783.5 642 63.2
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.4e-223 780.0 672 61.0
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 2.0e-222 776.2 666 59.5
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 2.0e-222 776.2 669 61.0
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 3.5e-222 775.4 665 61.8
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.3e-221 773.5 689 60.4
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 2.9e-221 772.3 659 61.3
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 2.0e-217 759.6 672 58.8
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 2.0e-217 759.6 665 60.0
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.7e-216 756.5 691 57.9
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 5.4e-215 751.5 682 57.8
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.3e-213 746.9 673 58.7
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.5e-212 743.4 673 58.4
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.9e-212 743.0 694 57.3
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 2.5e-212 742.7 671 57.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 4.2e-212 741.9 595 63.9
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 5.2e-210 734.9 610 62.6
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 2.6e-209 732.6 670 57.3
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 2.0e-206 723.0 657 57.8
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 2.7e-206 722.6 666 58.7
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.5e-206 721.8 725 54.5
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 3.6e-203 712.2 741 54.4
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 1.0e-202 710.7 650 58.9
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 4.0e-202 708.8 665 56.1
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 2.0e-201 706.4 603 61.7
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 2.2e-200 703.0 833 48.7
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 5.6e-196 688.3 642 56.2
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 1.6e-195 686.8 668 55.4
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 4.0e-194 682.2 668 54.8
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.4e-193 679.1 671 56.0
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 4.4e-193 678.7 665 55.9
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 9.8e-193 677.6 665 55.9
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 9.8e-193 677.6 667 55.2
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 6.4e-192 674.9 663 54.9
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 8.3e-192 674.5 675 54.4
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 9.2e-191 671.0 665 55.5
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 9.2e-191 671.0 665 55.5
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 9.2e-191 671.0 665 55.5
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 2.0e-190 669.8 665 55.0
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.0e-189 667.5 567 61.4
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.7e-189 666.8 651 55.9
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 6.2e-187 658.3 647 53.2
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 9.8e-185 651.0 652 55.1
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 4.9e-184 648.7 656 54.3
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 6.2e-179 631.7 587 56.4
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 8.1e-179 631.3 657 53.6
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 6.8e-178 628.2 647 53.5
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 4.9e-176 622.1 558 59.1
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 5.4e-175 618.6 643 52.4
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.6e-171 607.1 606 54.8
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 3.6e-171 605.9 644 51.7
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 4.7e-171 605.5 647 51.9
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 7.6e-169 598.2 563 56.7
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 1.9e-167 593.6 651 50.5
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 3.2e-167 592.8 666 51.2
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.7e-165 587.0 516 61.2
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 3.6e-163 579.3 620 51.1
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 1.3e-160 570.9 643 50.4
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 3.2e-159 566.2 644 48.4
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 2.3e-157 560.1 654 49.4
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.9e-157 559.3 483 59.8
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 4.0e-154 549.3 646 47.7
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 9.9e-153 544.7 559 54.9
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 2.4e-151 540.0 668 46.7
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 4.9e-144 515.8 503 54.7
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 2.5e-143 513.5 574 50.9
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 2.8e-131 473.4 450 56.0
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 2.8e-123 446.8 659 41.1
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 8.5e-120 435.3 629 44.8
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 5.5e-119 432.6 655 40.5
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.2e-118 431.4 559 47.6
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 2.7e-118 430.3 655 39.4
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 1.0e-117 428.3 761 38.8
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.3e-112 411.4 674 38.3
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 2.6e-100 370.5 448 46.9
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 2.6e-92 344.0 546 39.7
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 2.2e-91 340.9 504 41.7
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 7.0e-90 335.9 222 73.9
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.3e-88 331.6 227 70.5
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 4.3e-87 326.6 416 46.2
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 4.4e-84 316.6 406 46.8
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 4.1e-82 310.1 649 34.4
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.3e-77 294.3 272 58.5
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 4.9e-75 286.6 906 26.6
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 8.6e-64 249.2 308 50.3
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.5e-63 248.4 170 71.2
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.7e-59 235.0 169 70.4
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 4.9e-59 233.4 163 71.2
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.1e-58 232.3 184 66.3
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.6e-52 211.1 135 76.3
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.1e-49 201.4 145 69.7
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 2.5e-47 194.5 357 37.5
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 1.3e-46 192.2 165 61.8
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 3.6e-46 190.7 171 55.0
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 8.1e-46 189.5 175 59.4
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.2e-43 181.4 151 63.6
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 6.4e-43 179.9 162 56.8
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.2e-41 175.6 142 61.3
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.8e-37 161.8 127 61.4
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.1e-37 161.0 143 59.4
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 2.9e-35 154.5 654 25.5
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 7.9e-33 146.4 122 58.2
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.1e-31 142.5 145 51.7
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 1.6e-30 138.7 247 35.2
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 2.8e-30 137.9 163 48.5
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 4.2e-26 124.0 262 32.8
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 5.5e-26 123.6 255 32.5
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 9.3e-26 122.9 146 49.3
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.3e-23 114.4 91 63.7
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 7.4e-23 113.2 143 45.5
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 6.9e-21 106.7 103 54.4
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 1.4e-18 99.0 171 38.0
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 1.4e-18 99.0 55 78.2
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 1.9e-18 98.6 144 41.7
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 8.7e-16 89.7 55 67.3
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 1.9e-15 88.6 53 73.6
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 3.1e-13 81.3 61 60.7
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 7.7e-12 76.6 69 55.1


User provided reference genes

Program Settings