Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1699.1 845 100.0
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1624.0 845 94.8
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1620.9 845 94.6
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1604.0 845 94.0
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1468.0 842 84.9
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1466.1 846 84.5
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1465.7 846 84.4
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1465.3 842 84.4
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1464.5 842 84.2
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1462.2 842 84.1
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1459.9 845 84.7
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1458.4 842 84.0
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1453.0 851 83.4
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1452.2 851 83.4
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1450.6 849 83.2
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1448.3 851 83.3
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1444.5 851 83.1
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1441.0 837 82.8
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1439.1 845 82.5
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1424.1 845 83.3
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1422.5 838 83.1
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1422.1 844 81.6
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1419.1 850 81.8
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1417.5 846 81.7
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1416.4 846 81.7
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1406.3 848 81.6
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1402.1 845 82.0
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1398.3 852 81.9
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1395.9 863 79.3
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 845 81.3
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1394.8 861 79.0
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1389.0 845 80.5
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1382.5 848 80.7
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1381.3 846 80.4
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1380.9 847 80.0
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1380.2 847 80.0
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1379.8 846 80.0
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1379.0 847 79.5
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1378.6 861 78.0
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1373.6 861 77.9
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1373.2 849 79.7
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 861 77.8
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1369.0 845 79.3
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1367.4 911 74.9
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1364.4 865 78.0
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1363.2 895 75.8
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1362.1 845 78.7
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1357.8 842 79.1
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1357.8 847 78.6
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 851 79.0
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1356.3 868 77.2
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1355.9 910 75.1
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1355.1 847 78.9
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1354.3 849 78.4
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1350.9 845 78.9
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1347.4 920 72.8
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1347.0 845 79.1
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1346.3 924 74.1
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1343.6 851 78.7
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1342.8 920 72.7
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1338.6 860 78.0
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1338.6 845 78.1
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1333.5 863 75.7
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1331.6 848 77.7
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1330.9 845 77.5
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1328.2 849 78.0
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1327.8 866 76.3
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1327.4 866 75.9
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1325.8 848 77.4
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1321.6 865 75.6
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1321.6 865 75.6
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1320.8 866 75.9
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1320.8 866 75.9
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1320.8 866 75.9
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1320.8 865 75.7
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1320.4 866 75.8
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1320.1 845 76.4
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1319.7 865 75.4
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1317.8 865 75.6
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1315.1 848 76.8
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1308.1 843 76.2
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1302.3 950 70.1
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1300.4 875 75.4
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1282.7 788 78.8
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1273.1 762 81.8
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1251.1 842 73.8
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1243.0 858 70.7
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1242.6 839 71.5
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1233.0 726 82.0
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1139.0 841 69.4
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1128.6 848 68.2
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1082.8 852 67.0
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1081.2 844 62.3
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 2.4e-308 1062.0 836 62.7
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 4.2e-305 1051.2 1142 53.2
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 9.4e-305 1050.0 883 63.1
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.6e-291 1006.1 840 58.6
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 7.8e-283 977.2 696 72.3
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 3.9e-282 974.9 805 64.0
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.4e-279 966.5 852 62.6
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.5e-278 963.0 625 75.2
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 5.6e-257 891.3 729 65.6
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 5.1e-242 841.6 603 68.7
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 5.5e-228 795.0 686 62.2
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.1e-215 752.7 475 76.8
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 5.9e-198 695.3 433 80.1
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.5e-196 690.6 467 76.0
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 2.0e-190 670.2 407 77.9
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 6.1e-187 658.7 604 58.6
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 3.4e-177 626.3 850 41.6
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.4e-167 594.3 341 87.1
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.0e-167 592.0 369 82.4
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.3e-164 582.8 359 76.6
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 2.9e-160 570.1 859 39.9
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.8e-136 490.0 828 35.6
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 7.3e-132 475.7 434 57.6
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 8.1e-123 445.7 1011 31.8
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-122 444.5 596 45.8
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.1e-117 426.4 330 58.5
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 4.0e-114 416.8 376 61.4
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.2e-99 367.9 332 55.7
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.8e-99 367.5 263 67.3
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 6.3e-83 313.2 240 66.2
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-77 295.0 157 83.4
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 5.2e-77 293.5 218 67.0
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 9.8e-76 289.3 320 49.4
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 5.9e-73 280.0 165 83.0
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 6.2e-46 190.3 97 91.8
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 5.2e-37 160.6 97 77.3
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 6.8e-37 160.2 101 78.2
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 3.9e-32 144.4 95 73.7
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-31 142.1 111 65.8
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 4.3e-31 141.0 85 78.8
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 3.6e-30 137.9 94 71.3
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.4e-29 136.0 87 74.7
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.4e-29 135.2 119 58.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-28 132.9 91 70.3
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 3.4e-28 131.3 187 42.8
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 6.4e-27 127.1 99 69.7
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.1e-26 126.3 185 45.4
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 5.4e-26 124.0 125 59.2
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 4.6e-25 120.9 96 68.8
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.0e-24 119.8 67 83.6
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 2.3e-24 118.6 108 60.2
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.9e-24 117.9 100 65.0
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 3.3e-23 114.8 64 81.2
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 4.3e-23 114.4 103 63.1
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 4.8e-22 110.9 68 73.5
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 3.1e-21 108.2 107 53.3
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 9.9e-20 103.2 96 60.4
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.0e-16 93.2 52 82.7
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-16 92.4 77 59.7
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 3.9e-16 91.3 54 87.0
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 6.6e-16 90.5 115 45.2
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 2.5e-15 88.6 79 64.6
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 1.2e-12 79.7 49 81.6
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.5e-12 79.3 87 50.6
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.5e-12 79.3 87 50.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.9e-10 72.4 37 91.9
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 7.1e-10 70.5 79 51.9
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.0e-08 66.6 70 50.0
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 2.3e-08 65.5 85 49.4
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 2.5e-07 62.0 41 70.7


User provided reference genes

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