Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 2.7e-170 602.8 571 100.0
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 6.9e-150 535.0 571 82.7
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 4.9e-148 528.9 571 82.5
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 1.9e-147 526.9 571 82.7
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 6.5e-100 369.0 505 74.1
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 6.1e-98 362.5 574 62.2
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 1.4e-97 361.3 566 68.0
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 3.0e-97 360.1 553 71.1
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 5.7e-96 355.9 444 81.8
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 9.8e-96 355.1 333 67.6
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 9.8e-96 355.1 407 63.9
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 1.7e-95 354.4 583 64.3
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 2.2e-95 354.0 580 67.2
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 1.1e-94 351.7 333 67.6
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 5.4e-94 349.4 407 61.7
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 1.2e-93 348.2 333 67.6
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 2.7e-93 347.1 330 68.5
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 2.7e-93 347.1 333 67.3
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 4.5e-93 346.3 403 54.8
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 4.5e-93 346.3 287 63.4
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 1.0e-92 345.1 400 64.8
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 1.3e-92 344.7 401 65.1
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 1.7e-92 344.4 400 65.2
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 2.9e-92 343.6 411 62.0
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 6.6e-92 342.4 328 67.1
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 1.5e-91 341.3 495 73.3
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 3.3e-91 340.1 331 66.5
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 5.6e-91 339.3 589 67.4
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 3.6e-90 336.7 474 77.4
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 4.7e-90 336.3 575 67.0
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 8.0e-90 335.5 407 62.9
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 8.0e-90 335.5 444 80.0
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 8.0e-90 335.5 332 66.9
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 1.4e-89 334.7 322 68.0
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 1.8e-89 334.3 446 79.6
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 4.0e-89 333.2 419 62.8
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 5.2e-89 332.8 589 67.7
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 5.2e-89 332.8 334 66.5
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 5.2e-89 332.8 401 65.1
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 5.2e-89 332.8 444 79.1
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 6.8e-89 332.4 506 72.3
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 2.6e-88 330.5 403 58.1
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 1.7e-87 327.8 504 71.2
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 1.7e-87 327.8 328 67.4
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 1.4e-86 324.7 418 80.4
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 4.1e-86 323.2 445 78.4
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 9.2e-86 322.0 469 75.7
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.2e-85 321.6 566 63.6
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 1.2e-85 321.6 421 60.6
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 2.7e-85 320.5 332 62.0
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 3.5e-85 320.1 446 77.8
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 3.5e-85 320.1 418 75.1
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 5.9e-85 319.3 588 51.9
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 1.0e-84 318.5 495 69.9
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 1.3e-84 318.2 418 79.2
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 1.7e-84 317.8 580 65.5
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 2.3e-84 317.4 500 70.2
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 3.9e-84 316.6 470 72.3
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 6.6e-84 315.8 265 63.4
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 8.6e-84 315.5 400 59.5
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 8.6e-84 315.5 330 63.6
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 1.1e-83 315.1 327 62.7
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 4.3e-83 313.2 412 57.0
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 5.6e-83 312.8 323 65.9
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 6.2e-82 309.3 445 72.6
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 4.0e-81 306.6 228 70.6
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 5.2e-81 306.2 401 47.4
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 1.2e-80 305.1 230 68.7
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 1.2e-80 305.1 332 63.0
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 1.5e-80 304.7 273 70.3
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 2.6e-80 303.9 445 75.5
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 4.4e-80 303.1 497 63.2
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 5.8e-80 302.8 501 63.1
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 5.8e-80 302.8 501 63.1
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 7.5e-80 302.4 279 62.7
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 1.3e-79 301.6 501 62.9
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 1.3e-79 301.6 501 62.9
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 1.3e-79 301.6 451 71.4
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 1.7e-79 301.2 499 62.7
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 1.2e-77 295.0 501 61.7
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 1.6e-77 294.7 446 67.0
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 2.0e-77 294.3 322 60.6
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 2.0e-77 294.3 499 61.7
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 2.7e-77 293.9 447 67.1
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 2.7e-77 293.9 501 61.9
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 6.0e-77 292.7 500 61.4
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 1.0e-76 292.0 447 66.9
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 1.0e-76 292.0 274 69.7
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 2.3e-76 290.8 405 53.1
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 5.0e-76 289.7 276 69.9
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 6.6e-76 289.3 450 65.8
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 2.5e-75 287.3 275 67.6
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 5.6e-75 286.2 449 66.6
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 1.6e-74 284.6 449 66.4
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 2.1e-74 284.3 273 66.3
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 2.1e-74 284.3 445 72.6
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 2.1e-74 284.3 445 72.6
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 2.8e-74 283.9 210 72.9
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 8.1e-74 282.3 459 68.6
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 1.2e-72 278.5 306 55.2
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 1.2e-72 278.5 210 71.9
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 1.5e-72 278.1 445 67.4
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 9.8e-72 275.4 435 68.0
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 6.4e-71 272.7 293 59.7
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 7.1e-70 269.2 231 63.6
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.5e-67 261.5 387 62.5
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.1e-66 255.8 232 61.2
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.1e-66 255.8 232 61.6
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.8e-65 254.6 232 60.8
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 5.2e-65 253.1 232 61.2
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 1.2e-64 251.9 447 64.0
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 3.4e-64 250.4 449 63.5
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 2.2e-63 247.7 213 76.5
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 2.9e-63 247.3 273 63.0
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.4e-63 246.1 210 64.8
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 7.1e-62 242.7 158 83.5
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 8.6e-60 235.7 449 63.7
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 3.3e-59 233.8 454 60.6
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 6.2e-58 229.6 214 72.0
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 1.8e-57 228.0 404 52.7
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 1.2e-56 225.3 319 45.5
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 1.5e-56 224.9 194 61.3
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 3.4e-56 223.8 210 60.0
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 2.2e-55 221.1 170 65.9
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.5e-51 208.4 172 68.6
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 2.5e-51 207.6 449 63.5
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 2.8e-50 204.1 183 56.3
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 1.1e-46 192.2 332 48.2
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 1.4e-46 191.8 205 54.1
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 9.6e-43 179.1 187 66.8
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 2.4e-41 174.5 159 59.7
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.9e-35 154.8 139 63.3
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.9e-35 154.8 139 63.3
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.9e-35 154.8 139 63.3
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.5e-35 154.5 139 63.3
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.5e-35 154.5 140 62.1
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.6e-35 153.3 139 62.6
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.6e-35 153.3 139 62.6
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.6e-35 153.3 139 62.6
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.4e-35 152.9 139 62.6
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.4e-35 152.9 139 62.6
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.4e-35 152.9 139 63.3
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.6e-35 152.5 139 62.6
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.6e-34 151.8 139 62.6
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-33 148.7 139 61.2
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.3e-33 146.7 139 61.2
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.6e-32 144.4 134 61.9
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 3.8e-31 140.6 206 43.2
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 8.4e-31 139.4 79 86.1
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.2e-29 135.6 159 52.2
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 2.3e-28 131.3 148 48.6
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 3.9e-28 130.6 142 51.4
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 3.9e-28 130.6 122 60.7
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 1.1e-27 129.0 208 42.8
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 4.3e-27 127.1 274 41.2
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.6e-27 125.9 121 58.7
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 2.0e-24 118.2 199 53.3
RcHm_v2.0_Chr3g0484401 Rosa chinensis HOM05D003639 ORTHO05D004246 2.6e-24 117.9 105 59.0
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.1e-21 108.2 100 65.0
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 7.9e-21 106.3 205 34.1
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 1.3e-20 105.5 301 54.5
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 9.7e-19 99.4 119 49.6
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 1.0e-15 89.4 195 36.9
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 1.7e-15 88.6 122 41.8
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 3.2e-14 84.3 190 35.3
Atru.chr6.1380 Acer truncatum HOM05D003639 ORTHO05D004246 6.7e-12 76.6 253 57.3
QL05p082994 Quercus lobata HOM05D003639 ORTHO05D004246 3.7e-10 70.9 172 36.0
Zm00001eb344450 Zea mays HOM05D003639 ORTHO05D004246 6.5e-07 60.1 52 53.8
Atru.chr1.1192 Acer truncatum HOM05D003639 ORTHO05D004246 1.9e-06 58.5 94 71.3
COL.COLO4_13929 Corchorus olitorius HOM05D003639 ORTHO05D004246 1.9e-06 58.5 70 44.3


User provided reference genes

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