Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 1.4e-168 596.7 425 100.0
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 3.3e-104 382.9 425 65.2
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 9.5e-104 381.3 425 70.8
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 4.7e-103 379.0 425 62.8
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.2e-101 374.4 425 69.9
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 5.8e-101 372.1 425 63.8
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.2e-98 364.4 417 69.3
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 6.0e-98 362.1 426 68.3
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 5.0e-97 359.0 425 67.8
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 1.1e-94 351.3 425 67.8
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.4e-93 346.3 433 56.6
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 7.5e-93 345.1 425 57.4
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 3.7e-92 342.8 425 68.5
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 1.9e-91 340.5 422 64.0
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 5.4e-91 339.0 457 60.8
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 1.6e-90 337.4 425 60.9
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 1.6e-90 337.4 422 51.7
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 7.8e-90 335.1 425 67.8
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 2.5e-88 330.1 425 68.5
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 3.3e-88 329.7 440 58.6
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.3e-88 329.7 425 55.5
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 4.3e-88 329.3 425 67.5
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 7.3e-88 328.6 465 64.5
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 9.5e-88 328.2 425 55.3
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 1.2e-87 327.8 424 67.7
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 5.2e-86 322.4 425 54.6
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.2e-84 317.0 425 64.0
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 6.4e-84 315.5 425 65.9
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 1.4e-83 314.3 425 53.2
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 3.2e-83 313.2 425 66.6
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 2.7e-82 310.1 425 56.9
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.7e-81 307.4 438 56.4
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 1.1e-80 304.7 424 51.9
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 3.3e-80 303.1 425 52.2
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 2.8e-79 300.1 428 64.5
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.1e-78 298.1 425 59.8
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 1.4e-78 297.7 425 65.6
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 8.9e-78 295.0 425 56.2
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 1.2e-77 294.7 425 59.5
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.2e-77 294.7 423 65.0
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 4.4e-77 292.7 425 60.2
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 7.6e-77 292.0 423 64.8
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 7.6e-77 292.0 425 65.4
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 7.6e-77 292.0 422 62.1
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 7.6e-77 292.0 398 56.3
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 1.3e-76 291.2 422 63.0
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 1.1e-75 288.1 424 44.3
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.2e-75 286.6 491 46.4
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 4.2e-75 286.2 425 63.3
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.6e-74 284.3 424 64.4
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 1.3e-73 281.2 426 50.9
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 1.7e-73 280.8 425 62.8
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 1.5e-72 277.7 419 60.6
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 1.5e-72 277.7 423 63.8
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 7.3e-72 275.4 425 60.7
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 2.8e-71 273.5 425 61.4
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 6.2e-71 272.3 425 54.6
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 5.3e-70 269.2 425 57.2
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 1.2e-69 268.1 409 62.3
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.0e-69 267.3 425 60.2
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 3.4e-69 266.5 426 46.2
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 2.9e-68 263.5 425 53.6
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 8.4e-68 261.9 425 58.4
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 2.4e-67 260.4 421 61.0
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 2.4e-67 260.4 287 69.3
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 3.2e-67 260.0 425 60.0
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 6.0e-66 255.8 425 58.6
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.3e-65 253.8 406 40.6
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 6.6e-65 252.3 425 59.8
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 6.6e-65 252.3 425 52.7
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 8.7e-65 251.9 384 51.3
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 3.3e-64 250.0 422 60.0
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 4.3e-64 249.6 422 59.0
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 1.8e-62 244.2 425 58.1
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 4.0e-62 243.0 425 57.9
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 2.6e-61 240.4 425 58.8
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 9.9e-61 238.4 425 50.4
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 9.9e-61 238.4 310 60.6
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 1.3e-60 238.0 425 57.2
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 1.7e-60 237.7 422 57.3
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 2.2e-60 237.3 425 57.9
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 3.8e-60 236.5 419 58.0
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 3.8e-60 236.5 419 58.0
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 8.4e-60 235.3 425 58.6
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 1.1e-59 235.0 422 57.1
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 4.2e-59 233.0 382 60.7
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 7.1e-59 232.3 442 41.0
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 1.6e-58 231.1 425 49.9
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 6.0e-58 229.2 425 58.1
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 1.3e-57 228.0 415 58.1
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 2.3e-57 227.3 375 53.1
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 5.1e-57 226.1 233 54.9
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 6.7e-57 225.7 425 49.6
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 6.7e-57 225.7 425 55.5
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 1.9e-56 224.2 287 56.4
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 4.3e-56 223.0 423 50.4
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 9.6e-56 221.9 425 48.7
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.4e-54 217.2 437 37.3
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 9.3e-51 205.3 422 55.7
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 2.3e-49 200.7 212 53.3
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 3.0e-49 200.3 280 61.4
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 2.5e-48 197.2 429 47.8
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 8.4e-44 182.2 352 50.3
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 3.5e-42 176.8 203 69.5
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 7.9e-42 175.6 395 52.7
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 3.6e-34 150.2 419 36.5
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.7e-31 140.2 96 68.8
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 6.9e-30 136.0 416 32.0
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 3.4e-29 133.7 287 49.8
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 2.8e-23 114.0 184 63.6
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 1.8e-22 111.3 95 61.1
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 1.9e-19 101.3 85 64.7
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.6e-18 97.1 96 50.0
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 2.3e-17 94.4 95 49.5
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 1.1e-16 92.0 117 48.7
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 2.0e-16 91.3 101 56.4
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.3e-16 90.5 288 25.7
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 3.8e-12 77.0 188 28.7
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 5.5e-11 73.2 100 46.0
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 2.1e-10 71.2 51 66.7
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.7e-10 70.9 300 24.3
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 2.6e-08 64.3 46 73.9
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 1.3e-07 62.0 54 53.7
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 4.8e-07 60.1 101 36.6
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 9.1e-06 55.8 270 38.5


User provided reference genes

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