Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 4.5e-308 1060.4 546 100.0
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 1.6e-217 759.6 496 77.2
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.4e-215 751.9 492 76.6
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.3e-214 750.0 490 77.8
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 1.3e-214 750.0 496 75.6
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 1.3e-214 750.0 490 76.5
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 3.9e-211 738.4 492 74.4
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.9e-211 738.4 490 76.9
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 3.9e-211 738.4 491 75.2
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 6.7e-211 737.6 522 71.1
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 8.7e-211 737.3 490 75.5
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 4.3e-210 734.9 490 76.1
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 4.3e-210 734.9 498 73.5
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 1.6e-209 733.0 490 75.5
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 2.8e-209 732.3 492 75.2
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 6.3e-209 731.1 490 73.9
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 4.1e-208 728.4 499 72.7
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 4.1e-208 728.4 499 75.2
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 6.9e-208 727.6 495 74.3
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.2e-207 726.9 472 77.8
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 1.5e-207 726.5 488 74.6
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 3.4e-207 725.3 526 69.6
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 4.5e-207 724.9 494 73.5
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 4.5e-207 724.9 508 73.8
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 5.9e-207 724.5 524 70.6
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 1.3e-206 723.4 499 72.3
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 2.2e-206 722.6 492 74.2
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 2.2e-206 722.6 495 72.7
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 3.8e-206 721.8 499 72.3
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 5.0e-206 721.5 492 74.0
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 6.5e-206 721.1 491 73.9
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.5e-206 720.7 524 70.0
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 1.1e-205 720.3 490 72.0
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 1.4e-205 719.9 481 74.6
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.4e-205 719.9 493 73.0
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 2.5e-205 719.2 494 72.5
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 5.5e-205 718.0 494 71.3
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.2e-204 716.8 498 73.5
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 2.1e-204 716.1 499 71.1
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 2.7e-204 715.7 498 73.1
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 3.6e-204 715.3 494 71.1
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 3.6e-204 715.3 513 70.8
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 4.6e-204 714.9 493 74.2
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 6.1e-204 714.5 490 73.5
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.0e-203 713.8 490 71.6
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 1.4e-203 713.4 492 73.6
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 1.8e-203 713.0 533 69.0
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.3e-203 712.6 495 74.5
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 2.3e-203 712.6 492 74.0
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 3.0e-203 712.2 498 72.7
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 3.9e-203 711.8 492 73.4
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 5.1e-203 711.4 513 71.3
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 8.8e-203 710.7 492 73.6
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 8.8e-203 710.7 492 73.4
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 8.8e-203 710.7 498 72.7
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 1.1e-202 710.3 492 73.4
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 1.5e-202 709.9 505 70.9
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 2.0e-202 709.5 492 73.0
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 2.0e-202 709.5 516 69.2
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 2.6e-202 709.1 488 73.2
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.6e-202 709.1 554 66.8
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 3.3e-202 708.8 498 72.7
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 4.4e-202 708.4 500 72.2
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 7.4e-202 707.6 501 70.3
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 7.4e-202 707.6 499 72.5
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 1.7e-201 706.4 491 71.5
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 2.8e-201 705.7 499 72.3
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 4.8e-201 704.9 492 72.0
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 4.8e-201 704.9 482 73.2
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 6.3e-201 704.5 492 73.0
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 8.2e-201 704.1 495 72.7
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 8.2e-201 704.1 490 70.8
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 1.1e-200 703.7 494 72.7
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 1.8e-200 703.0 490 70.8
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 4.1e-200 701.8 495 72.3
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 6.9e-200 701.0 504 71.2
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 6.9e-200 701.0 492 70.7
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.0e-199 699.5 471 75.2
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 3.4e-199 698.7 484 71.7
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 4.5e-199 698.4 489 71.4
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 7.7e-199 697.6 488 70.5
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 1.3e-198 696.8 492 69.7
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 1.3e-198 696.8 492 72.0
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 8.5e-198 694.1 501 69.9
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 1.4e-197 693.3 492 71.3
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.9e-197 693.0 491 69.9
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 7.2e-197 691.0 489 71.2
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 2.0e-194 682.9 502 67.9
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 1.3e-193 680.2 513 66.9
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 5.9e-191 671.4 492 69.9
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 2.2e-190 669.5 485 68.7
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 1.7e-185 653.3 566 63.3
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 3.7e-185 652.1 435 73.8
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 4.0e-179 632.1 498 63.7
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 2.8e-177 625.9 490 65.5
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 8.0e-172 607.8 630 53.5
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 3.1e-168 595.9 515 59.4
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.1e-165 587.4 467 65.5
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 5.2e-163 578.6 484 61.2
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 9.8e-162 574.3 386 73.1
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 6.4e-161 571.6 492 58.3
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 5.9e-159 565.1 505 57.0
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.4e-152 543.9 482 58.3
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 1.4e-144 517.3 501 55.9
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.5e-135 486.1 326 77.6
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.1e-124 450.3 361 69.0
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 1.8e-123 447.2 410 57.3
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.9e-109 400.6 261 73.6
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.2e-103 381.3 556 42.1
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 9.3e-96 355.1 257 65.4
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.9e-73 280.4 370 46.2
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 2.9e-73 280.4 287 54.0
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 5.7e-69 266.2 172 71.5
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.3e-67 259.6 460 38.9
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 5.0e-65 253.1 189 65.6
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 5.9e-58 229.6 155 69.7
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 1.3e-57 228.4 244 49.2
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 4.2e-56 223.4 158 70.9
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.3e-54 217.6 142 69.7
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 1.5e-45 188.3 136 75.7
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 1.7e-44 184.9 120 74.2
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 1.9e-43 181.4 125 78.4
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 6.6e-41 172.9 149 57.0
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.7e-39 166.8 156 57.7
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.2e-35 154.1 301 36.5
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 6.0e-34 149.8 173 49.7
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 3.9e-33 147.1 99 80.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 3.9e-33 147.1 99 80.8
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 8.6e-33 146.0 198 43.9
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 4.3e-32 143.7 96 72.9
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 1.4e-27 128.6 125 62.4
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 7.3e-24 116.3 93 61.3
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 3.0e-17 94.4 145 40.0
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 3.3e-16 90.9 62 66.1
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.6e-16 90.1 72 68.1
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 7.6e-13 79.7 189 29.6
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.9e-12 77.0 49 81.6
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 8.4e-12 76.3 62 61.3
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 3.2e-11 74.3 50 74.0
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 3.1e-06 57.8 72 40.3


User provided reference genes

Program Settings