Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 4.1e-156 554.7 281 100.0
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 2.7e-99 365.9 224 82.6
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 2.9e-40 169.9 262 43.9
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.4e-31 141.0 234 39.7
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 3.5e-30 136.3 200 44.5
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.3e-18 95.9 108 44.4
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 8.4e-16 88.6 101 45.5
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 1.1e-15 88.2 190 34.2
Sc03g0006450 Simmondsia chinensis HOM05D008654 ORTHO05D011165 3.2e-15 86.7 142 40.1
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.1e-15 85.5 76 55.3
Sc02g0004440 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.9e-14 82.0 250 31.2
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.0e-13 81.6 124 38.7
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 5.1e-13 79.3 124 37.1
Sc21g0004240 Simmondsia chinensis HOM05D065844 ORTHO05D388456 8.7e-13 78.6 81 55.6
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.1e-12 78.2 124 37.1
Sc21g0004480 Simmondsia chinensis HOM05D065844 ORTHO05D389585 1.5e-12 77.8 81 55.6
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.3e-12 76.3 86 39.5
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.6e-11 74.3 105 37.1
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.8e-11 73.6 79 50.6
Sc07g0005070 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.7e-11 73.2 132 33.3
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 8.1e-11 72.0 78 50.0
Sc12g0007750 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.1e-10 71.6 76 50.0
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.0e-10 69.7 73 43.8
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 4.0e-10 69.7 76 47.4
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 9.0e-10 68.6 76 47.4
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.2e-09 68.2 76 44.7
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.6e-09 67.0 72 48.6
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.8e-09 65.9 76 42.1
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 1.7e-08 64.3 79 43.0
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 1.7e-08 64.3 116 36.2
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.9e-08 62.8 84 38.1
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 8.4e-08 62.0 74 44.6
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 1.4e-07 61.2 93 37.6
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 3.2e-07 60.1 74 43.2
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 4.2e-07 59.7 74 43.2
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 4.2e-07 59.7 74 43.2
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 4.2e-07 59.7 74 43.2
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 5.5e-07 59.3 74 41.9
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 7.1e-07 58.9 79 39.2
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 7.1e-07 58.9 74 41.9
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 7.1e-07 58.9 74 43.2
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 7.1e-07 58.9 74 41.9
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 7.1e-07 58.9 74 43.2
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 9.3e-07 58.5 75 38.7
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 9.3e-07 58.5 74 41.9
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 1.2e-06 58.2 74 41.9
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 1.2e-06 58.2 74 41.9
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.2e-06 58.2 74 43.2
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.6e-06 57.8 74 41.9
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 1.6e-06 57.8 74 41.9
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.6e-06 57.8 74 40.5
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 1.6e-06 57.8 74 40.5
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 1.6e-06 57.8 74 41.9
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 2.1e-06 57.4 74 40.5
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.1e-06 57.4 74 40.5
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 2.1e-06 57.4 74 41.9
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 2.1e-06 57.4 74 41.9
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 2.1e-06 57.4 74 40.5
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 2.1e-06 57.4 74 40.5
Sc26g0003240 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.1e-06 57.4 78 37.2
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 2.1e-06 57.4 74 41.9
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 2.7e-06 57.0 93 37.6
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 2.7e-06 57.0 93 37.6
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 2.7e-06 57.0 93 37.6
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 2.7e-06 57.0 93 37.6
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 2.7e-06 57.0 93 37.6
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 2.7e-06 57.0 74 40.5
Os02g0789700 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D011165 2.7e-06 57.0 76 38.2
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 2.7e-06 57.0 93 36.6
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.7e-06 57.0 73 42.5
Sc12g0007940 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.7e-06 57.0 73 39.7
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 3.5e-06 56.6 74 40.5
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 3.5e-06 56.6 74 40.5
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 3.5e-06 56.6 74 40.5
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 3.5e-06 56.6 74 41.9
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 3.5e-06 56.6 93 35.5
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.5e-06 56.6 74 41.9
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 3.5e-06 56.6 74 40.5
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 3.5e-06 56.6 74 39.2
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 3.5e-06 56.6 74 39.2
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 3.5e-06 56.6 79 39.2
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 3.5e-06 56.6 79 40.5
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 4.6e-06 56.2 74 40.5
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 4.6e-06 56.2 74 39.2
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 4.6e-06 56.2 74 40.5
Sc18g0004540 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.6e-06 56.2 135 26.7
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 4.6e-06 56.2 74 40.5
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 6.0e-06 55.8 93 36.6
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 6.0e-06 55.8 104 30.8
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 7.9e-06 55.5 93 35.5
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 7.9e-06 55.5 93 35.5
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 7.9e-06 55.5 93 35.5
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 7.9e-06 55.5 93 35.5
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 7.9e-06 55.5 74 39.2
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 7.9e-06 55.5 74 40.5
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 7.9e-06 55.5 74 40.5
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 7.9e-06 55.5 74 40.5
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 7.9e-06 55.5 74 40.5
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 7.9e-06 55.5 74 39.2
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 7.9e-06 55.5 74 40.5
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 7.9e-06 55.5 74 41.9
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 7.9e-06 55.5 79 38.0
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 7.9e-06 55.5 74 41.9


User provided reference genes

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