Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0000360 Simmondsia chinensis HOM05D009348 ORTHO05D030613 2.0e-65 252.3 126 100.0
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.6e-27 126.3 117 59.0
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 3.2e-23 112.1 94 58.5
Sc01g0000330 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.6e-22 108.2 91 58.2
Sc22g0002690 Simmondsia chinensis HOM05D000043 ORTHO05D030613 9.6e-20 100.5 92 53.3
Sc22g0003060 Simmondsia chinensis HOM05D009348 ORTHO05D010856 3.6e-19 98.6 77 62.3
Sc08g0006400 Simmondsia chinensis HOM05D011136 ORTHO05D010856 7.1e-15 84.3 111 45.0
Sc04g0010510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.9e-12 76.3 65 58.5
Sc19g0004790 Simmondsia chinensis HOM05D009348 ORTHO05D010856 3.3e-12 75.5 77 54.5
Ah.12g063050 Amaranthus hybridus HOM05D000030 ORTHO05D000009 1.3e-11 73.6 97 44.3
Ah.16g108500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.5e-09 65.1 80 42.5
Sc05g0005460 Simmondsia chinensis HOM05D008762 ORTHO05D030613 5.8e-09 64.7 90 36.7
Zm00001eb018860 Zea mays HOM05D003264 ORTHO05D003276 2.2e-08 62.8 101 36.6
SMO347G0267 Selaginella moellendorffii HOM05D003264 ORTHO05D003276 2.9e-08 62.4 89 38.2
Ah.07g198450 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.8e-08 62.0 81 43.2
SMO276G0012 Selaginella moellendorffii HOM05D003264 ORTHO05D003276 6.4e-08 61.2 96 35.4
Sc14g0002620 Simmondsia chinensis HOM05D009209 ORTHO05D011705 8.4e-08 60.8 82 41.5
Sc16g0005360 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.4e-08 60.8 82 39.0
Pp3c1_31280 Physcomitrium patens HOM05D003264 ORTHO05D003276 1.1e-07 60.5 103 35.9
vmacro11531 Vaccinium macrocarpon HOM05D010265 ORTHO05D009356 1.1e-07 60.5 87 37.9
Ah.08g219500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.4e-07 60.1 80 37.5
Ah.10g037270 Amaranthus hybridus HOM05D005124 ORTHO05D005914 1.4e-07 60.1 96 35.4
Ah.12g060360 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.4e-07 60.1 81 35.8
Sc20g0004530 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.4e-07 60.1 54 57.4
Actinidia29589 Actinidia chinensis HOM05D003264 ORTHO05D003276 1.9e-07 59.7 92 34.8
MBI11_g44589_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.9e-07 59.7 80 41.2
Pp3c11_21430 Physcomitrium patens HOM05D003264 ORTHO05D003276 1.9e-07 59.7 103 35.9
Sc14g0007840 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.9e-07 59.7 48 58.3
Sc09g0002060 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.4e-07 59.3 114 36.8
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 2.4e-07 59.3 97 33.0
MBI17_g36745_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 3.2e-07 58.9 78 41.0
Lj5g0026451 Lotus japonicus HOM05D008220 ORTHO05D010358 4.2e-07 58.5 84 38.1
Pp3c7_7590 Physcomitrium patens HOM05D003264 ORTHO05D003276 4.2e-07 58.5 103 35.0
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.2e-07 58.5 107 36.4
Atru.chr13.1199 Acer truncatum HOM05D003264 ORTHO05D003276 5.5e-07 58.2 92 33.7
Zm00001eb199160 Zea mays HOM05D003264 ORTHO05D003276 5.5e-07 58.2 92 35.9
Actinidia33133 Actinidia chinensis HOM05D003264 ORTHO05D003276 7.1e-07 57.8 92 33.7
CSS0006291 Camellia sinensis var. sinensis HOM05D003264 ORTHO05D003276 7.1e-07 57.8 92 33.7
Mapoly0007s0152 Marchantia polymorpha HOM05D003264 ORTHO05D003276 7.1e-07 57.8 94 34.0
SEGI_08784 Sequoiadendron giganteum HOM05D003264 ORTHO05D003276 7.1e-07 57.8 104 33.7
Sc22g0003960 Simmondsia chinensis HOM05D009348 ORTHO05D030613 7.1e-07 57.8 51 52.9
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 9.3e-07 57.4 104 33.7
CSS0011997 Camellia sinensis var. sinensis HOM05D003264 ORTHO05D003276 9.3e-07 57.4 92 33.7
DCAR_008733 Daucus carota HOM05D003264 ORTHO05D003276 9.3e-07 57.4 85 35.3
FAN02G4093 Fragaria x ananassa HOM05D003264 ORTHO05D003276 9.3e-07 57.4 92 33.7
Potri.005G165400 Populus trichocarpa HOM05D003264 ORTHO05D003276 9.3e-07 57.4 92 33.7
QL12p036662 Quercus lobata HOM05D003264 ORTHO05D003276 9.3e-07 57.4 92 33.7
Rhsim07G0202800 Rhododendron simsii HOM05D003264 ORTHO05D003276 9.3e-07 57.4 103 33.0
CiPaw.08G044700 Carya illinoinensis HOM05D003264 ORTHO05D003276 1.2e-06 57.0 92 33.7
Haze_22259 Corylus avellana HOM05D000391 ORTHO05D003276 1.2e-06 57.0 92 33.7
Lj6g0014297 Lotus japonicus HOM05D008220 ORTHO05D010358 1.2e-06 57.0 77 36.4
Mapoly0024s0018 Marchantia polymorpha HOM05D003264 ORTHO05D003276 1.2e-06 57.0 107 33.6
Potri.002G095800 Populus trichocarpa HOM05D003264 ORTHO05D003276 1.2e-06 57.0 92 33.7
SEGI_17731 Sequoiadendron giganteum HOM05D003264 ORTHO05D003276 1.2e-06 57.0 101 35.6
Thecc.01G085600 Theobroma cacao HOM05D023671 ORTHO05D003276 1.2e-06 57.0 78 41.0
Actinidia11796 Actinidia chinensis HOM05D002604 ORTHO05D009356 1.6e-06 56.6 94 35.1
Aa31LG3G17620 Aethionema arabicum HOM05D003264 ORTHO05D003276 1.6e-06 56.6 94 31.9
Ah.07g196620 Amaranthus hybridus HOM05D008762 ORTHO05D031041 1.6e-06 56.6 87 35.6
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.6e-06 56.6 85 30.6
EL10Ac1g01229 Beta vulgaris HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
CiPaw.07G180500 Carya illinoinensis HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
ClCG09G015410 Citrullus lanatus HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
Dinv14322 Davidia involucrata HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
FvH4_6g21680 Fragaria vesca HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
FAN14G0471 Fragaria x ananassa HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
Lsat_1_v5_gn_6_102981 Lactuca sativa HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
Lj4A103T47 Lonicera japonica HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
Lj4A722T71 Lonicera japonica HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
Prupe.7G083500 Prunus persica HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
Rhsim06G0083100 Rhododendron simsii HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
RcHm_v2.0_Chr3g0478961 Rosa chinensis HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
Hund16914 Selenicereus undatus HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
vmacro21279 Vaccinium macrocarpon HOM05D003264 ORTHO05D003276 1.6e-06 56.6 92 33.7
Atru.chr5.2123 Acer truncatum HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Actinidia23250 Actinidia chinensis HOM05D012898 ORTHO05D009356 2.1e-06 56.2 104 35.6
AagrBONN_evm.TU.Sc2ySwM_340.1293 Anthoceros agrestis HOM05D003264 ORTHO05D003276 2.1e-06 56.2 71 38.0
MSTRG.22152 Avicennia marina HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
ClCG08G011060 Citrullus lanatus HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 34.8
Cc02_g21570 Coffea canephora HOM05D003264 ORTHO05D003276 2.1e-06 56.2 85 36.5
Cc10_g07270 Coffea canephora HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
MELO3C011357.2 Cucumis melo HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 34.8
MELO3C018644.2 Cucumis melo HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
CsaV3_2G024240 Cucumis sativus L. HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 34.8
CsaV3_7G006480 Cucumis sativus L. HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
ECA232G1728 Erigeron canadensis HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Eucgr.G00770 Eucalyptus grandis HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Lalb_Chr20g0111561 Lupinus albus HOM05D000142 ORTHO05D000124 2.1e-06 56.2 85 35.3
MD08G1182200 Malus domestica HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Medtr5g070450 Medicago truncatula HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Nn5g30123 Nelumbo nucifera HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Potri.003G023800 Populus trichocarpa HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Prupe.1G516100 Prunus persica HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Sabra03G0014900 Salix brachista HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
SEGI_06350 Sequoiadendron giganteum HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 34.8
Sc07g0006130 Simmondsia chinensis HOM05D009209 ORTHO05D009629 2.1e-06 56.2 80 40.0
Solyc01g105140.3 Solanum lycopersicum HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Solyc04g074040.3 Solanum lycopersicum HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Sopen01g047670 Solanum pennellii HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
Sopen04g029250 Solanum pennellii HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
PGSC0003DMG400017719 Solanum tuberosum HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
SGA_v2.0_scaffold104G30078 Striga asiatica HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 33.7
vmacro19930 Vaccinium macrocarpon HOM05D003264 ORTHO05D003276 2.1e-06 56.2 92 32.6
Actinidia10317 Actinidia chinensis HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 32.6
Actinidia30767 Actinidia chinensis HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 32.6
MSTRG.24461 Avicennia marina HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 33.7
CDE10G0548 Ceratophyllum demersum HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 32.6
CDE10G0834 Ceratophyllum demersum HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 32.6
AUR62018901 Chenopodium quinoa HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 33.7
AUR62027748 Chenopodium quinoa HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 33.7
ECA246G2989 Erigeron canadensis HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 33.7
HanXRQChr05g0147361 Helianthus annuus HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 33.7
Lsat_1_v5_gn_9_41561 Lactuca sativa HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 33.7
MD15G1367900 Malus domestica HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 33.7
Nn1g05346 Nelumbo nucifera HOM05D003264 ORTHO05D003276 2.7e-06 55.8 99 32.3
SEGI_13212 Sequoiadendron giganteum HOM05D003264 ORTHO05D003276 2.7e-06 55.8 103 33.0
Sc23g0000200 Simmondsia chinensis HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 33.7
HPP92_027250 Vanilla planifolia HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 33.7
GSVIVG01009023001 Vitis vinifera HOM05D003264 ORTHO05D003276 2.7e-06 55.8 92 33.7
Ah.02g117550 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.5e-06 55.5 131 32.1
ATR0118G028 Amborella trichopoda HOM05D003264 ORTHO05D003276 3.5e-06 55.5 92 33.7
Aqoxy6G00798 Aquilegia oxysepala HOM05D003264 ORTHO05D003276 3.5e-06 55.5 92 33.7
CBR_g34604 Chara braunii HOM05D003264 ORTHO05D003276 3.5e-06 55.5 106 34.0
Dinv44769 Davidia involucrata HOM05D003264 ORTHO05D003276 3.5e-06 55.5 92 33.7
Lj3g0023441 Lotus japonicus HOM05D008220 ORTHO05D010358 3.5e-06 55.5 93 33.3
Peaxi162Scf00152g01021 Petunia axillaris HOM05D003264 ORTHO05D003276 3.5e-06 55.5 92 33.7
PGR119G0586 Punica granatum HOM05D000142 ORTHO05D000124 3.5e-06 55.5 76 38.2
TAR625G1537 Trochodendron aralioides HOM05D003264 ORTHO05D003276 3.5e-06 55.5 95 32.6
Actinidia00266 Actinidia chinensis HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 32.6
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.6e-06 55.1 104 34.6
Ah.15g100500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.6e-06 55.1 113 32.7
Ciclev10029102m.g Citrus clementina HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
Dinv09033 Davidia involucrata HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
Dinv24193 Davidia involucrata HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 32.6
Eucgr.F00318 Eucalyptus grandis HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 32.6
FvH4_5g37470 Fragaria vesca HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
FAN04G2506 Fragaria x ananassa HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
FAN08G1579 Fragaria x ananassa HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
FAN13G2489 Fragaria x ananassa HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
FAN18G2837 Fragaria x ananassa HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 4.6e-06 55.1 87 39.1
Manes.14G165400 Manihot esculenta HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
Oeu012922.1 Olea europaea HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
RcHm_v2.0_Chr7g0239081 Rosa chinensis HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
Sed0010987 Sechium edule HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 32.6
Sed0012050 Sechium edule HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 32.6
Sc10g0002300 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.6e-06 55.1 69 43.5
PGSC0003DMG401012560 Solanum tuberosum HOM05D003264 ORTHO05D003276 4.6e-06 55.1 92 33.7
arahy.Tifrunner.gnm1.ann1.DEZ300 Arachis hypogaea HOM05D003264 ORTHO05D003276 6.0e-06 54.7 92 32.6
arahy.Tifrunner.gnm1.ann1.V5MEW2 Arachis hypogaea HOM05D003264 ORTHO05D003276 6.0e-06 54.7 92 32.6
CDE04G2837 Ceratophyllum demersum HOM05D001543 ORTHO05D001722 6.0e-06 54.7 81 39.5
CDE09G0892 Ceratophyllum demersum HOM05D000142 ORTHO05D001253 6.0e-06 54.7 88 37.5
Ciclev10002266m.g Citrus clementina HOM05D003264 ORTHO05D003276 6.0e-06 54.7 105 33.3
COL.COLO4_29667 Corchorus olitorius HOM05D000142 ORTHO05D000124 6.0e-06 54.7 76 38.2
Glyma.05G117600 Glycine max HOM05D003264 ORTHO05D003276 6.0e-06 54.7 92 32.6
Glyma.08G072600 Glycine max HOM05D003264 ORTHO05D003276 6.0e-06 54.7 92 32.6
PSO541G3918 Papaver somniferum HOM05D003264 ORTHO05D003276 6.0e-06 54.7 92 33.7
PSO781G0066 Papaver somniferum HOM05D003264 ORTHO05D003276 6.0e-06 54.7 92 33.7
Phvul.002G208600 Phaseolus vulgaris HOM05D003264 ORTHO05D003276 6.0e-06 54.7 92 32.6
Sed0004939 Sechium edule HOM05D003264 ORTHO05D003276 6.0e-06 54.7 92 32.6
Hund27848 Selenicereus undatus HOM05D001197 ORTHO05D000124 6.0e-06 54.7 75 38.7
Hund27852 Selenicereus undatus HOM05D001197 ORTHO05D000124 6.0e-06 54.7 75 38.7
TAR628G0714 Trochodendron aralioides HOM05D003264 ORTHO05D003276 6.0e-06 54.7 92 33.7
Ah.06g183510 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.9e-06 54.3 101 29.7
Ah.11g040120 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.9e-06 54.3 107 35.5
Carub.0008s2499 Capsella rubella HOM05D003264 ORTHO05D003276 7.9e-06 54.3 92 32.6
Ca_18351_v3 Cicer arietinum L. HOM05D003264 ORTHO05D003276 7.9e-06 54.3 92 32.6
COL.COLO4_24953 Corchorus olitorius HOM05D003264 ORTHO05D003276 7.9e-06 54.3 92 32.6
Duzib248G1348 Durio zibethinus HOM05D003264 ORTHO05D003276 7.9e-06 54.3 103 32.0
Lj4g0021375 Lotus japonicus HOM05D003264 ORTHO05D003276 7.9e-06 54.3 92 32.6
MBI17_g32407_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 7.9e-06 54.3 83 34.9
Medtr4g094235 Medicago truncatula HOM05D003264 ORTHO05D003276 7.9e-06 54.3 92 32.6
Psat7g098320 Pisum sativum HOM05D003264 ORTHO05D003276 7.9e-06 54.3 92 32.6
Sabra05G0124700 Salix brachista HOM05D003264 ORTHO05D003276 7.9e-06 54.3 92 32.6
Thecc.02G138900 Theobroma cacao HOM05D003264 ORTHO05D003276 7.9e-06 54.3 92 32.6
TPR.G10450 Trifolium pratense HOM05D003264 ORTHO05D003276 7.9e-06 54.3 92 32.6


User provided reference genes

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