Gene: Sopen04g029250

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g029250
  • Transcript Identifier Sopen04g029250.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 70760425-70764500 : positive

Gene Family Information

  • ID HOM05D003264
  • #Genes/#Species 210/90
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g029250.1

Descriptions

  • Description encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks. | ortholog of human splicing factor SC35 (SC35) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing | LOCATED IN: cytosol, nuclear speck, membrane | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT5G64200

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G64200

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT5G64200
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G64200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003954 RNA recognition motif domain, eukaryote
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated