Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1359.7 709 100.0
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1179.1 687 88.5
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1176.8 709 85.5
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1176.4 709 84.8
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 687 88.6
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1174.1 709 85.2
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1173.3 692 87.0
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 712 85.1
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 709 84.6
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 709 84.9
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 709 83.8
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 709 83.9
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1158.3 709 84.2
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 709 84.1
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 697 84.5
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 709 83.6
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 709 83.6
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 697 84.4
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 709 83.2
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 705 83.1
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 693 85.1
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1144.0 709 82.8
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1144.0 709 82.8
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 732 82.1
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 701 84.3
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 709 82.4
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 709 82.4
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 709 82.8
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 709 82.7
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 709 82.7
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 737 80.5
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 709 82.7
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 713 82.7
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 704 81.8
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 720 82.2
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 690 84.2
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 709 82.5
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1134.8 709 83.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 684 84.6
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 684 84.6
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 684 84.6
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 715 82.0
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 706 83.6
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1130.2 709 81.5
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1127.9 706 83.1
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1127.5 736 79.5
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 710 82.1
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 685 84.5
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 684 84.1
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 698 82.2
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 684 83.9
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 704 82.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1119.8 697 81.8
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 685 83.5
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 697 81.6
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 692 82.1
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 697 81.5
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 675 84.7
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 684 82.6
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 684 82.6
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 684 82.7
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 691 81.8
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1113.2 684 82.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1113.2 697 81.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 684 82.5
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 691 81.8
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 696 81.0
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1110.9 685 82.6
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1110.9 698 81.7
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1110.1 691 81.8
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1105.5 694 81.7
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1105.1 726 78.5
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1103.2 712 78.7
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1101.7 709 80.8
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 710 80.3
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 701 81.7
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 697 80.5
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 688 81.2
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 694 80.8
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1096.3 694 80.7
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1095.9 727 79.1
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1094.3 685 82.5
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1094.0 709 79.4
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1090.9 709 80.3
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1083.6 711 80.0
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1082.0 668 82.2
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 4.9e-312 1074.7 738 75.7
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 1.9e-311 1072.0 784 72.3
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 4.8e-310 1067.4 681 79.4
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 4.8e-310 1067.4 694 79.0
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 3.1e-309 1064.7 739 76.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 5.3e-309 1063.9 694 77.5
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.9e-308 1060.4 721 76.6
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 4.8e-302 1040.8 697 75.9
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 4.8e-302 1040.8 690 77.1
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 9.1e-301 1036.6 666 80.3
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.0e-299 1033.1 738 74.3
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.5e-295 1019.2 591 88.5
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 9.7e-295 1016.5 707 74.7
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.1e-289 998.8 744 69.6
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.8e-278 961.8 613 80.4
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.0e-272 941.8 689 68.9
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.0e-272 941.8 689 68.9
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.4e-271 938.3 554 87.5
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 2.4e-269 932.2 700 66.9
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.0e-269 930.6 631 77.7
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.7e-265 917.9 584 79.6
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 6.8e-264 914.1 694 66.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 3.5e-260 901.7 691 66.3
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.9e-254 882.1 683 70.1
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.1e-250 870.2 589 76.7
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.5e-250 869.8 566 77.2
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 4.7e-249 864.8 518 85.5
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.0e-243 845.5 675 68.6
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.2e-233 813.5 496 84.1
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.7e-225 785.0 681 58.3
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 4.6e-212 741.9 690 54.6
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.0e-195 686.0 423 79.9
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.9e-195 685.6 471 78.6
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.7e-153 547.4 764 42.8
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.2e-151 541.2 328 80.2
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.9e-141 507.3 798 37.2
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.1e-127 460.7 280 82.9
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.9e-120 437.6 270 80.4
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 5.4e-120 436.0 269 82.2
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.7e-118 431.0 359 61.6
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.0e-114 417.5 744 36.4
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 9.6e-109 398.7 233 85.0
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.1e-107 393.7 261 80.5
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 9.9e-106 388.7 253 76.7
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.1e-103 380.9 237 80.6
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.6e-100 371.3 250 80.0
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.8e-78 298.1 182 79.1
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.6e-76 291.6 192 83.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 5.5e-72 276.6 215 67.0
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.4e-70 271.9 148 86.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.8e-68 264.2 195 71.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 6.7e-62 243.0 192 72.4
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 6.3e-60 236.5 155 68.4
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.5e-56 225.3 170 67.6
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.8e-52 211.1 114 95.6
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 3.1e-51 207.6 180 66.7
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.2e-50 205.7 214 57.5
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.0e-49 202.6 165 64.2
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.5e-48 198.0 488 28.7
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.7e-47 193.7 122 81.1
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.3e-41 175.6 111 88.3
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 3.4e-37 161.0 104 76.9
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.4e-35 155.6 111 73.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 1.2e-29 136.0 100 71.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.3e-28 132.5 151 53.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.4e-27 128.3 100 68.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.4e-27 128.3 100 68.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-24 119.4 81 76.5
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.5e-24 119.0 93 69.9
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 3.3e-24 117.9 72 83.3
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 6.8e-22 110.2 116 56.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 7.5e-21 106.7 62 79.0
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 8.3e-20 103.2 69 72.5
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.4e-19 102.4 57 84.2
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 5.4e-19 100.5 59 79.7
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 9.2e-19 99.8 60 76.7
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 5.0e-17 94.0 65 76.9
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.6e-15 89.0 82 59.8
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.7e-12 77.8 62 67.7
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 4.9e-12 77.4 62 64.5
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.1e-11 76.3 78 51.3
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 6.0e-10 70.5 46 73.9
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 4.3e-08 64.3 40 82.5
FAN25G2786 Fragaria x ananassa HOM05D004330 ORTHO05D206697 5.2e-06 57.4 31 83.9


User provided reference genes

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