Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 3.5e-161 571.6 297 100.0
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 6.0e-89 331.6 237 72.2
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 3.9e-88 328.9 254 69.7
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 1.1e-87 327.4 240 68.8
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.1e-87 327.4 242 68.2
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.1e-87 327.4 242 68.2
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 1.9e-87 326.6 233 70.8
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 9.6e-87 324.3 240 68.3
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 9.6e-87 324.3 240 68.3
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 1.3e-86 323.9 247 68.0
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 1.6e-86 323.6 234 70.5
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 4.8e-86 322.0 253 70.8
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 1.4e-85 320.5 247 69.2
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 1.8e-85 320.1 242 67.8
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 5.3e-85 318.5 252 67.9
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 6.9e-85 318.2 236 70.3
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 1.2e-84 317.4 250 67.6
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 2.0e-84 316.6 236 70.3
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 2.0e-84 316.6 264 64.8
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 5.8e-84 315.1 245 71.0
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 5.8e-84 315.1 250 67.2
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 9.9e-84 314.3 234 71.4
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 2.2e-83 313.2 238 71.4
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 4.9e-83 312.0 258 64.0
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 6.4e-83 311.6 258 63.2
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 8.4e-83 311.2 247 68.0
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 1.1e-82 310.8 256 64.1
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 1.1e-82 310.8 245 69.8
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 1.1e-82 310.8 232 71.1
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 1.4e-82 310.5 251 65.7
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 2.5e-82 309.7 254 66.9
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 3.2e-82 309.3 235 71.1
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 3.2e-82 309.3 263 66.2
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 4.2e-82 308.9 286 60.8
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 4.2e-82 308.9 259 63.7
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 9.3e-82 307.8 241 69.3
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 1.6e-81 307.0 258 63.6
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 2.1e-81 306.6 280 60.4
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 2.1e-81 306.6 280 60.4
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 2.1e-81 306.6 247 67.6
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 2.7e-81 306.2 280 60.4
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 3.5e-81 305.8 242 66.1
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 3.5e-81 305.8 231 70.1
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 7.9e-81 304.7 290 59.3
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 1.8e-80 303.5 232 70.7
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 2.3e-80 303.1 257 63.8
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 2.3e-80 303.1 285 60.0
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 2.3e-80 303.1 265 62.6
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 2.3e-80 303.1 265 62.6
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 2.3e-80 303.1 240 67.9
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 2.3e-80 303.1 253 64.0
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 3.0e-80 302.8 235 69.8
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 3.0e-80 302.8 254 66.5
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 3.9e-80 302.4 233 66.5
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 5.1e-80 302.0 250 64.0
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 6.7e-80 301.6 236 67.8
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 6.7e-80 301.6 236 67.8
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 8.7e-80 301.2 230 70.4
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 8.7e-80 301.2 290 58.3
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 8.7e-80 301.2 230 70.4
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 1.9e-79 300.1 244 66.4
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 5.6e-79 298.5 233 67.0
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 9.6e-79 297.7 238 66.4
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 9.6e-79 297.7 261 64.8
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 1.3e-78 297.4 250 64.4
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 1.3e-78 297.4 235 68.5
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 1.6e-78 297.0 253 63.6
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 2.1e-78 296.6 268 62.3
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 2.8e-78 296.2 238 65.1
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 3.7e-78 295.8 246 65.0
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 3.7e-78 295.8 250 67.6
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 6.2e-78 295.0 240 65.0
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 1.4e-77 293.9 284 58.8
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 6.9e-77 291.6 244 63.9
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 6.9e-77 291.6 254 62.2
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 9.0e-77 291.2 233 65.2
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 1.5e-76 290.4 248 64.5
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 2.6e-76 289.7 236 66.1
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 5.8e-76 288.5 240 67.9
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 2.2e-75 286.6 246 64.2
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 2.9e-75 286.2 283 57.2
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 2.5e-74 283.1 270 61.5
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 7.1e-74 281.6 240 62.9
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 4.6e-73 278.9 150 86.0
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 7.9e-73 278.1 308 54.2
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 1.0e-72 277.7 245 62.0
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 3.0e-72 276.2 233 60.5
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 1.5e-71 273.9 150 84.0
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 1.9e-71 273.5 280 56.1
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 2.8e-70 269.6 168 79.2
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 1.4e-69 267.3 264 56.1
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 2.4e-69 266.5 150 83.3
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 8.5e-67 258.1 130 91.5
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 1.6e-65 253.8 138 84.1
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 2.0e-63 246.9 141 80.9
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 3.7e-62 242.7 154 76.6
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 4.8e-62 242.3 200 60.0
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 1.1e-61 241.1 231 54.5
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 1.4e-61 240.7 204 63.7
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 1.2e-60 237.7 254 56.7
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 1.5e-60 237.3 203 59.6
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 4.5e-60 235.7 180 65.6
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 1.2e-52 211.1 281 48.4
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 8.8e-48 194.9 157 60.5
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 4.4e-47 192.6 95 94.7
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 2.8e-46 189.9 96 90.6
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 2.0e-44 183.7 95 88.4
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 3.5e-44 183.0 90 94.4
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 1.1e-37 161.4 233 43.8
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 7.0e-37 158.7 268 39.9
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.0e-35 154.8 119 68.1
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 1.5e-34 151.0 161 48.4
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 1.9e-34 150.6 248 42.7
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 2.6e-31 140.2 154 51.9
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 9.1e-29 131.7 137 43.8
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 1.6e-25 120.9 161 47.8
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 4.1e-21 106.3 130 46.9
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 2.0e-20 104.0 201 32.8
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 5.0e-11 72.8 164 31.7
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 1.8e-08 64.3 85 44.7


User provided reference genes

Program Settings