Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 8.9e-222 773.5 439 100.0
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 2.0e-101 373.6 444 54.5
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 2.9e-100 369.8 446 55.6
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 6.6e-100 368.6 454 54.8
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 3.3e-99 366.3 459 54.7
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 4.3e-99 365.9 470 50.9
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.5e-96 357.5 450 56.9
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.7e-93 346.7 455 53.2
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.5e-91 340.9 457 53.0
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 4.3e-91 339.3 441 51.0
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 7.3e-91 338.6 445 51.9
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.2e-90 337.8 438 53.9
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.6e-90 336.3 450 51.6
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 3.1e-89 333.2 461 49.2
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 6.8e-89 332.0 457 53.2
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 4.4e-88 329.3 453 50.8
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 4.4e-88 329.3 453 50.8
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.2e-87 327.0 452 48.2
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.2e-87 327.0 456 48.9
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.1e-86 324.7 464 51.5
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 1.1e-86 324.7 478 47.5
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.4e-86 324.3 460 48.5
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.9e-86 323.9 452 50.2
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 2.4e-86 323.6 452 50.4
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 2.1e-85 320.5 491 47.5
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.7e-85 320.1 454 46.9
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 3.9e-84 316.2 471 49.7
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 5.1e-84 315.8 449 49.2
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 5.1e-84 315.8 472 48.1
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 6.6e-84 315.5 448 52.0
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 8.6e-84 315.1 463 48.2
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.1e-83 314.7 447 47.0
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 7.3e-83 312.0 488 48.4
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 7.3e-83 312.0 471 49.0
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 7.3e-83 312.0 482 46.1
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 9.5e-83 311.6 462 47.4
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 1.2e-82 311.2 511 45.2
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.6e-82 310.8 452 49.8
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 1.6e-82 310.8 457 48.6
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 2.1e-82 310.5 456 45.2
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.8e-82 310.1 471 49.0
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 2.8e-82 310.1 446 52.2
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.8e-82 310.1 458 50.7
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 2.8e-82 310.1 456 50.4
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.8e-82 310.1 463 46.2
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 8.1e-82 308.5 455 48.8
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 8.1e-82 308.5 449 46.5
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 1.4e-81 307.8 454 50.0
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 2.3e-81 307.0 479 47.4
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 3.1e-81 306.6 536 43.8
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 5.2e-81 305.8 457 47.5
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 5.2e-81 305.8 451 47.0
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 1.5e-80 304.3 461 44.7
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 4.4e-80 302.8 456 48.7
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.3e-79 301.2 513 46.8
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.7e-79 300.8 470 46.8
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.7e-79 300.8 457 47.9
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.9e-79 300.1 455 46.6
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 2.9e-79 300.1 457 50.1
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 4.9e-79 299.3 509 45.4
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 3.2e-78 296.6 463 47.9
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 5.4e-78 295.8 441 47.4
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 5.4e-78 295.8 435 47.4
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 9.2e-78 295.0 482 45.9
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.2e-77 294.7 466 48.5
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 1.6e-77 294.3 479 43.6
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.1e-77 293.9 464 47.8
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.5e-77 293.1 453 48.1
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 6.0e-77 292.4 449 49.4
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 6.0e-77 292.4 456 46.9
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 6.0e-77 292.4 465 43.4
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 7.8e-77 292.0 475 46.9
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 7.8e-77 292.0 462 46.3
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 7.8e-77 292.0 462 50.0
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 7.8e-77 292.0 447 48.3
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 3.0e-76 290.0 452 49.1
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 3.0e-76 290.0 461 50.5
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.9e-76 289.7 465 47.3
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 6.6e-76 288.9 448 45.8
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.9e-75 287.3 482 44.6
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 4.3e-75 286.2 456 47.6
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 5.6e-75 285.8 501 43.3
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 5.6e-75 285.8 474 46.4
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.6e-74 284.3 467 46.9
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 6.2e-74 282.3 455 44.2
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 6.2e-74 282.3 460 49.8
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 1.4e-73 281.2 472 44.9
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.8e-73 280.8 456 43.4
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 1.8e-73 280.8 439 51.9
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.4e-73 280.4 470 48.1
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 4.0e-73 279.6 468 44.7
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 5.2e-73 279.3 447 46.5
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 6.8e-73 278.9 469 44.6
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 1.2e-72 278.1 461 44.7
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 2.0e-72 277.3 461 46.0
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 7.6e-72 275.4 453 45.3
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.3e-71 274.6 470 44.5
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.3e-71 274.6 464 44.4
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.7e-71 274.2 456 47.1
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.9e-71 273.5 453 47.9
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.9e-71 273.5 451 48.1
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.9e-71 273.5 439 44.6
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 3.8e-71 273.1 456 46.3
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 6.4e-71 272.3 418 45.7
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.1e-70 271.6 448 46.7
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 2.4e-70 270.4 456 44.7
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 7.1e-70 268.9 475 42.9
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.2e-69 268.1 452 46.5
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 6.0e-69 265.8 439 45.3
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.0e-68 265.0 442 43.7
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.7e-68 264.2 475 41.7
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 5.1e-68 262.7 465 47.3
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 6.6e-68 262.3 450 47.6
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-67 261.5 461 43.6
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-67 261.5 461 43.6
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.1e-67 261.5 461 43.6
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.9e-67 260.8 447 47.7
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.5e-67 260.4 461 44.9
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 7.3e-67 258.8 462 42.9
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 7.3e-67 258.8 438 44.1
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 1.6e-66 257.7 462 42.6
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 4.8e-66 256.1 470 46.4
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 4.8e-66 256.1 467 46.5
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.8e-65 254.2 387 45.0
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.8e-65 254.2 457 47.3
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 3.1e-65 253.4 434 48.8
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 6.9e-65 252.3 468 42.9
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 9.0e-65 251.9 441 44.0
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 9.0e-65 251.9 489 40.7
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.2e-64 251.5 446 46.6
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-64 251.1 438 44.1
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.5e-64 251.1 460 43.5
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 2.6e-64 250.4 441 48.3
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.7e-63 247.7 448 45.5
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.9e-63 246.9 231 62.3
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 7.9e-61 238.8 452 44.7
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 8.7e-60 235.3 464 44.8
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 4.8e-58 229.6 447 41.2
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 1.8e-57 227.6 440 40.9
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 5.8e-56 222.6 446 42.6
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 8.4e-55 218.8 448 44.0
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 8.7e-52 208.8 448 39.1
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 3.7e-50 203.4 489 38.0
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 5.3e-49 199.5 437 37.8
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.0e-48 197.6 483 37.5
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 3.8e-47 193.4 440 40.9
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 3.8e-47 193.4 440 40.9
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.1e-46 191.8 440 40.7
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.9e-46 191.0 361 42.7
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.8e-44 184.5 353 43.6
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 6.2e-42 176.0 467 39.6
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 9.0e-41 172.2 445 36.9
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.0e-39 168.7 346 41.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.9e-39 167.2 471 36.3
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 3.8e-39 166.8 155 63.2
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 3.3e-35 153.7 475 35.8
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.0e-27 127.9 168 47.0
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.4e-25 121.7 84 71.4
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 6.7e-20 102.8 100 59.0
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 9.7e-19 99.0 110 54.5
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 6.3e-18 96.3 112 47.3
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 8.2e-18 95.9 98 59.2
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 8.2e-18 95.9 98 59.2
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 7.0e-17 92.8 98 57.1
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.5e-14 85.1 86 59.3
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 1.9e-14 84.7 114 47.4
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 1.9e-14 84.7 114 47.4
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 1.6e-13 81.6 510 29.2
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.7e-13 80.9 115 52.2
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.7e-13 80.9 126 45.2
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 4.7e-13 80.1 93 55.9
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 4.0e-12 77.0 92 46.7
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 2.2e-10 71.2 103 47.6
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 8.2e-10 69.3 68 55.9
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 1.8e-09 68.2 244 29.9
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 4.1e-09 67.0 79 46.8
Mapoly0028s0135 Marchantia polymorpha HOM05D002258 ORTHO05D002539 9.4e-06 55.8 149 31.5


User provided reference genes

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