Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0001750 Simmondsia chinensis HOM05D004387 ORTHO05D005218 4.9e-61 237.7 123 100.0
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 6.7e-34 147.5 91 80.2
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 1.5e-33 146.4 91 80.2
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 3.3e-33 145.2 91 79.1
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 7.4e-33 144.1 91 79.1
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 1.3e-32 143.3 91 79.1
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.8e-32 142.1 91 76.9
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 2.8e-32 142.1 87 81.6
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 3.7e-32 141.7 89 80.9
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 3.7e-32 141.7 93 76.3
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 4.8e-32 141.4 93 76.3
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 6.2e-32 141.0 91 75.8
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 8.2e-32 140.6 93 75.3
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 8.2e-32 140.6 93 75.3
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 1.1e-31 140.2 92 76.1
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 1.1e-31 140.2 93 73.1
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 1.4e-31 139.8 93 75.3
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 1.8e-31 139.4 93 76.3
EL10Ac3g07090 Beta vulgaris HOM05D004387 ORTHO05D005218 2.4e-31 139.0 93 75.3
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 2.4e-31 139.0 91 75.8
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 3.1e-31 138.7 91 76.9
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 3.1e-31 138.7 87 80.5
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 3.1e-31 138.7 91 79.1
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 4.0e-31 138.3 89 79.8
ClCG04G000130 Citrullus lanatus HOM05D004387 ORTHO05D005218 4.0e-31 138.3 85 82.4
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 4.0e-31 138.3 84 81.0
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 5.3e-31 137.9 87 79.3
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 5.3e-31 137.9 91 76.9
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 6.9e-31 137.5 87 79.3
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 6.9e-31 137.5 89 75.3
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 9.0e-31 137.1 90 76.7
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 9.0e-31 137.1 85 81.2
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 9.0e-31 137.1 85 81.2
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 9.0e-31 137.1 91 75.8
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 9.0e-31 137.1 87 78.2
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 9.0e-31 137.1 93 73.1
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 1.2e-30 136.7 110 64.5
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 1.2e-30 136.7 89 76.4
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 1.2e-30 136.7 87 79.3
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 1.2e-30 136.7 91 76.9
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 1.5e-30 136.3 91 75.8
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 2.0e-30 136.0 93 75.3
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 2.6e-30 135.6 91 75.8
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 2.6e-30 135.6 87 77.0
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 2.6e-30 135.6 87 79.3
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 3.4e-30 135.2 89 76.4
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 3.4e-30 135.2 85 78.8
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 5.8e-30 134.4 87 79.3
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 7.6e-30 134.0 87 77.0
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 1.0e-29 133.7 87 78.2
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 1.7e-29 132.9 89 75.3
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 2.2e-29 132.5 89 74.2
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 2.9e-29 132.1 88 76.1
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 2.9e-29 132.1 86 76.7
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 2.9e-29 132.1 91 72.5
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 2.9e-29 132.1 89 74.2
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 3.8e-29 131.7 87 75.9
Cc06_g17120 Coffea canephora HOM05D004387 ORTHO05D005218 3.8e-29 131.7 86 76.7
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 3.8e-29 131.7 86 76.7
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 3.8e-29 131.7 93 71.0
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 3.8e-29 131.7 93 74.2
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 4.9e-29 131.3 78 80.8
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 6.5e-29 131.0 93 72.0
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 8.4e-29 130.6 87 77.0
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 8.4e-29 130.6 91 74.7
CSS0024704 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.1e-28 130.2 91 71.4
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 1.4e-28 129.8 93 73.1
Gohir.D01G090350 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.4e-28 129.8 92 70.7
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 1.9e-28 129.4 92 69.6
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 1.9e-28 129.4 87 75.9
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 3.2e-28 128.6 93 69.9
Eucgr.A00063 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.2e-28 128.6 93 68.8
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 3.2e-28 128.6 93 68.8
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 4.2e-28 128.3 93 73.1
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 4.2e-28 128.3 78 78.2
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 5.5e-28 127.9 93 68.8
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 5.5e-28 127.9 87 73.6
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 7.1e-28 127.5 87 73.6
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 7.1e-28 127.5 93 69.9
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 9.3e-28 127.1 91 70.3
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 9.3e-28 127.1 94 68.1
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 9.3e-28 127.1 87 73.6
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 9.3e-28 127.1 87 73.6
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 9.3e-28 127.1 93 69.9
Gohir.D01G090850 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.2e-27 126.7 87 72.4
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 1.2e-27 126.7 93 68.8
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 1.2e-27 126.7 87 73.6
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 1.2e-27 126.7 93 66.7
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 1.2e-27 126.7 93 66.7
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 1.2e-27 126.7 93 66.7
CSS0001525 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.6e-27 126.3 92 71.7
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 2.1e-27 125.9 87 72.4
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 2.1e-27 125.9 87 72.4
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 2.1e-27 125.9 87 72.4
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 2.7e-27 125.6 94 69.1
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 2.7e-27 125.6 92 68.5
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.5e-27 125.2 91 68.1
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 3.5e-27 125.2 93 67.7
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 3.5e-27 125.2 108 63.0
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 4.6e-27 124.8 86 73.3
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 7.9e-27 124.0 91 69.2
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 7.9e-27 124.0 87 72.4
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 1.3e-26 123.2 87 70.1
Eucgr.A00267 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.3e-26 123.2 93 67.7
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 2.3e-26 122.5 83 73.5
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 2.3e-26 122.5 89 68.5
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 2.3e-26 122.5 89 69.7
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.0e-26 122.1 91 71.4
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 3.0e-26 122.1 93 65.6
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 3.9e-26 121.7 85 74.1
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 6.7e-26 120.9 93 65.6
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 1.1e-25 120.2 89 68.5
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.1e-25 120.2 89 68.5
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.5e-25 119.8 89 69.7
unitig_46.g18442 Utricularia gibba HOM05D004387 ORTHO05D005218 3.3e-25 118.6 120 55.8
Eucgr.A00265 Eucalyptus grandis HOM05D004387 ORTHO05D005218 5.7e-25 117.9 93 67.7
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 9.7e-25 117.1 94 64.9
SEGI_29832 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 2.6e-22 109.0 91 60.4
Mapoly0071s0030 Marchantia polymorpha HOM05D004387 ORTHO05D005218 3.4e-22 108.6 96 56.2
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.3e-21 106.7 72 75.0
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 1.3e-21 106.7 83 62.7
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 2.9e-21 105.5 85 61.2
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 2.9e-21 105.5 83 65.1
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 1.9e-20 102.8 90 58.9
Zm00001eb317600 Zea mays HOM05D004387 ORTHO05D005218 2.5e-20 102.4 83 63.9
Zm00001eb036840 Zea mays HOM05D004387 ORTHO05D005218 3.2e-20 102.1 83 62.7
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 4.2e-20 101.7 87 65.5
Zm00001eb161840 Zea mays HOM05D004387 ORTHO05D005218 5.5e-20 101.3 83 61.4
Haze_19856 Corylus avellana HOM05D004387 ORTHO05D005218 7.2e-20 100.9 63 79.4
Haze_01634 Corylus avellana HOM05D004387 ORTHO05D005218 9.3e-20 100.5 66 75.8
SMO169G0201 Selaginella moellendorffii HOM05D004387 ORTHO05D005218 3.6e-19 98.6 83 59.0
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 3.9e-18 95.1 72 68.1
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 1.5e-17 93.2 91 59.3
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.9e-17 92.8 93 58.1
Cre10.g440900 Chlamydomonas reinhardtii HOM05D004387 ORTHO05D005218 2.2e-16 89.4 83 47.0
CBR_g41407 Chara braunii HOM05D004387 ORTHO05D005218 9.1e-15 84.0 80 52.5
Eucgr.A00266 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.9e-12 76.3 93 46.2
Nn7g36292 Nelumbo nucifera HOM05D004387 ORTHO05D005218 1.5e-09 66.6 70 50.0
CBR_g20981 Chara braunii HOM05D004387 ORTHO05D005218 2.0e-09 66.2 69 53.6
CDE07G0852 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 2.4e-07 59.3 57 49.1
PGSC0003DMG400023725 Solanum tuberosum HOM05D004387 ORTHO05D005218 9.1e-07 57.4 40 75.0


User provided reference genes

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