Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0004230 Simmondsia chinensis HOM05D005073 ORTHO05D006166 1.0e-175 620.2 356 100.0
Duzib041G0650 Durio zibethinus HOM05D005073 ORTHO05D006166 1.4e-95 354.0 239 77.0
Thecc.08G112000 Theobroma cacao HOM05D005073 ORTHO05D006166 1.4e-95 354.0 239 77.0
Gohir.A05G229400 Gossypium hirsutum HOM05D005073 ORTHO05D006166 1.8e-95 353.6 239 77.4
GSVIVG01008990001 Vitis vinifera HOM05D005073 ORTHO05D006166 1.8e-95 353.6 239 77.4
Gohir.D05G231700 Gossypium hirsutum HOM05D005073 ORTHO05D006166 4.0e-95 352.4 239 76.2
Gorai.009G239900 Gossypium raimondii HOM05D005073 ORTHO05D006166 6.7e-95 351.7 238 76.5
CsaV3_5G023620 Cucumis sativus L. HOM05D005073 ORTHO05D006166 1.1e-94 350.9 239 75.3
Ciclev10003846m.g Citrus clementina HOM05D005073 ORTHO05D006166 2.0e-94 350.1 236 77.1
TAR381G0980 Trochodendron aralioides HOM05D005073 ORTHO05D006166 2.0e-94 350.1 239 77.4
Potri.002G092600 Populus trichocarpa HOM05D005073 ORTHO05D006166 3.3e-94 349.4 238 75.2
Atru.chr13.1265 Acer truncatum HOM05D005073 ORTHO05D006166 7.5e-94 348.2 239 74.9
Actinidia30750 Actinidia chinensis HOM05D005073 ORTHO05D006166 7.5e-94 348.2 237 78.5
Dinv44743 Davidia involucrata HOM05D005073 ORTHO05D006166 7.5e-94 348.2 359 59.1
Sabra02G0073100 Salix brachista HOM05D005073 ORTHO05D006166 1.3e-93 347.4 238 74.8
Haze_00571 Corylus avellana HOM05D005073 ORTHO05D006166 2.2e-93 346.7 240 78.3
CiPaw.05G232900 Carya illinoinensis HOM05D005073 ORTHO05D006166 2.8e-93 346.3 238 76.1
CSS0000538 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 4.8e-93 345.5 239 76.6
CSS0031049 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 4.8e-93 345.5 239 76.6
FAN18G0258 Fragaria x ananassa HOM05D005073 ORTHO05D006166 8.2e-93 344.7 237 76.4
FvH4_5g38010 Fragaria vesca HOM05D005073 ORTHO05D006166 1.1e-92 344.4 239 75.7
Sed0012840 Sechium edule HOM05D005073 ORTHO05D006166 1.4e-92 344.0 239 74.1
arahy.Tifrunner.gnm1.ann1.T10PLA Arachis hypogaea HOM05D005073 ORTHO05D006166 2.4e-92 343.2 237 75.1
Thhalv10018349m.g Eutrema salsugineum HOM05D005073 ORTHO05D006166 2.4e-92 343.2 239 75.3
FAN04G2698 Fragaria x ananassa HOM05D005073 ORTHO05D006166 2.4e-92 343.2 239 75.3
RcHm_v2.0_Chr7g0239951 Rosa chinensis HOM05D005073 ORTHO05D006166 2.4e-92 343.2 239 74.9
ClCG03G008990 Citrullus lanatus HOM05D005073 ORTHO05D006166 3.1e-92 342.8 239 74.9
MELO3C022795.2 Cucumis melo HOM05D005073 ORTHO05D006166 3.1e-92 342.8 239 74.1
FAN13G1954 Fragaria x ananassa HOM05D005073 ORTHO05D006166 3.1e-92 342.8 239 75.3
Hma1.2p1_0120F.1_g057030 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 5.3e-92 342.0 238 73.9
FAN08G1532 Fragaria x ananassa HOM05D005073 ORTHO05D006166 7.0e-92 341.7 239 75.7
Atru.BG.242.p Acer truncatum HOM05D005073 ORTHO05D006166 1.2e-91 340.9 236 75.0
Cpa.g.sc66.92 Carica papaya HOM05D005073 ORTHO05D006166 1.2e-91 340.9 238 76.5
COL.COLO4_16466 Corchorus olitorius HOM05D005073 ORTHO05D006166 1.6e-91 340.5 239 75.3
Sp5g33150 Schrenkiella parvula HOM05D005073 ORTHO05D006166 1.6e-91 340.5 239 73.6
Aa31LG4G8070 Aethionema arabicum HOM05D005073 ORTHO05D006166 2.7e-91 339.7 239 73.6
TPR.G34614 Trifolium pratense HOM05D005073 ORTHO05D006166 4.5e-91 339.0 240 73.8
Eucgr.F02969 Eucalyptus grandis HOM05D005073 ORTHO05D006166 5.9e-91 338.6 239 72.8
Nitab4.5_0009824g0010 Nicotiana tabacum HOM05D005073 ORTHO05D006166 5.9e-91 338.6 360 55.8
SalBow7G0210 Salvia bowleyana HOM05D005073 ORTHO05D006166 5.9e-91 338.6 238 72.3
Sopen04g028940 Solanum pennellii HOM05D005073 ORTHO05D006166 5.9e-91 338.6 240 72.9
Nitab4.5_0000469g0190 Nicotiana tabacum HOM05D005073 ORTHO05D006166 7.7e-91 338.2 239 72.8
Peaxi162Scf00310g00019 Petunia axillaris HOM05D005073 ORTHO05D006166 7.7e-91 338.2 239 73.2
Prupe.1G511900 Prunus persica HOM05D005073 ORTHO05D006166 7.7e-91 338.2 238 73.9
A07p43250 Brassica napus HOM05D005073 ORTHO05D006166 1.0e-90 337.8 239 73.6
MD08G1177300 Malus domestica HOM05D005073 ORTHO05D006166 1.3e-90 337.4 239 74.1
Medtr3g073790 Medicago truncatula HOM05D005073 ORTHO05D006166 1.3e-90 337.4 235 75.7
Phvul.009G028601 Phaseolus vulgaris HOM05D005073 ORTHO05D006166 1.7e-90 337.0 239 74.1
Psat5g137200 Pisum sativum HOM05D005073 ORTHO05D006166 1.7e-90 337.0 240 72.9
AT1G78010 Arabidopsis thaliana HOM05D005073 ORTHO05D006166 2.2e-90 336.7 239 74.9
CANSAT54G2794 Cannabis sativa HOM05D005073 ORTHO05D006166 2.2e-90 336.7 238 73.5
AL2G38280 Arabidopsis lyrata HOM05D005073 ORTHO05D006166 5.0e-90 335.5 239 74.5
CAN.G517.17 Capsicum annuum HOM05D005073 ORTHO05D006166 5.0e-90 335.5 240 72.1
Ca_15226_v3 Cicer arietinum L. HOM05D005073 ORTHO05D006166 5.0e-90 335.5 240 72.5
CARHR071470 Cardamine hirsuta HOM05D005073 ORTHO05D006166 6.5e-90 335.1 239 71.5
PGSC0003DMG400009470 Solanum tuberosum HOM05D005073 ORTHO05D006166 6.5e-90 335.1 240 72.5
Lj1g0017290 Lotus japonicus HOM05D005073 ORTHO05D006166 8.5e-90 334.7 239 74.1
THA.LOC104810083 Tarenaya hassleriana HOM05D005073 ORTHO05D006166 8.5e-90 334.7 240 73.3
Carub.0002s2490 Capsella rubella HOM05D005073 ORTHO05D006166 1.1e-89 334.3 239 74.5
Hund26651 Selenicereus undatus HOM05D005073 ORTHO05D006166 1.1e-89 334.3 287 66.2
Glyma.04G105000 Glycine max HOM05D005073 ORTHO05D006166 1.5e-89 334.0 237 74.7
SGA_v2.0_scaffold48G18021 Striga asiatica HOM05D005073 ORTHO05D006166 1.9e-89 333.6 240 72.5
VMungo1309G2662 Vigna mungo HOM05D005073 ORTHO05D006166 1.9e-89 333.6 237 73.4
Lalb_Chr23g0270691 Lupinus albus HOM05D005073 ORTHO05D006166 5.5e-89 332.0 239 73.6
C06p51930 Brassica napus HOM05D005073 ORTHO05D006166 7.2e-89 331.6 239 73.2
Cc10_g05860 Coffea canephora HOM05D005073 ORTHO05D006166 7.2e-89 331.6 239 72.8
PGR044G0799 Punica granatum HOM05D005073 ORTHO05D006166 1.2e-88 330.9 239 73.2
SGA_v2.0_scaffold24G10294 Striga asiatica HOM05D005073 ORTHO05D006166 1.2e-88 330.9 238 71.8
Glyma.06G106000 Glycine max HOM05D005073 ORTHO05D006166 1.6e-88 330.5 237 73.8
HanXRQChr10g0278501 Helianthus annuus HOM05D005073 ORTHO05D006166 2.7e-88 329.7 239 71.5
Manes.18G070400 Manihot esculenta HOM05D005073 ORTHO05D006166 2.7e-88 329.7 237 70.0
Oeu024557.1 Olea europaea HOM05D005073 ORTHO05D006166 3.6e-88 329.3 240 72.5
Migut.C00179 Erythranthe guttata HOM05D005073 ORTHO05D006166 4.7e-88 328.9 239 70.3
Aqoxy1G01853 Aquilegia oxysepala HOM05D005073 ORTHO05D006166 8.0e-88 328.2 238 72.3
AUR62034358 Chenopodium quinoa HOM05D005073 ORTHO05D006166 2.3e-87 326.6 238 72.3
ECA246G0226 Erigeron canadensis HOM05D005073 ORTHO05D006166 3.0e-87 326.2 239 72.4
Nn1g05274 Nelumbo nucifera HOM05D005073 ORTHO05D006166 5.2e-87 325.5 239 72.8
unitig_0.g2069 Utricularia gibba HOM05D005073 ORTHO05D006166 5.2e-87 325.5 240 70.4
AUR62022347 Chenopodium quinoa HOM05D005073 ORTHO05D006166 6.8e-87 325.1 238 71.8
arahy.Tifrunner.gnm1.ann1.K8DV01 Arachis hypogaea HOM05D005073 ORTHO05D006166 3.4e-86 322.8 246 70.7
EL10Ac1g01681 Beta vulgaris HOM05D005073 ORTHO05D006166 4.4e-86 322.4 349 54.2
PSO447G0212 Papaver somniferum HOM05D005073 ORTHO05D006166 5.7e-86 322.0 237 70.0
PSO210G7769 Papaver somniferum HOM05D005073 ORTHO05D006166 1.3e-85 320.9 237 69.2
Os08g0407000 Oryza sativa ssp. japonica HOM05D005073 ORTHO05D006166 2.4e-84 316.6 236 71.2
CDE03G0055 Ceratophyllum demersum HOM05D005073 ORTHO05D006166 9.1e-84 314.7 241 68.9
HPP92_016434 Vanilla planifolia HOM05D005073 ORTHO05D006166 1.0e-82 311.2 240 65.0
ATR0564G350 Amborella trichopoda HOM05D005073 ORTHO05D006166 5.0e-82 308.9 236 67.8
HPP92_016476 Vanilla planifolia HOM05D005073 ORTHO05D006166 8.5e-82 308.1 240 66.7
Lj4C715T1 Lonicera japonica HOM05D005073 ORTHO05D006166 8.0e-80 301.6 239 67.4
Ah.16g109530 Amaranthus hybridus HOM05D005073 ORTHO05D006166 8.8e-79 298.1 270 61.5
BraA07t31846Z Brassica rapa HOM05D005073 ORTHO05D006166 2.6e-78 296.6 239 66.9
BolC6t40215H Brassica oleracea HOM05D005073 ORTHO05D006166 1.3e-77 294.3 239 66.1
SEGI_22824 Sequoiadendron giganteum HOM05D005073 ORTHO05D006166 2.2e-77 293.5 238 63.9
Zm00001eb178820 Zea mays HOM05D005073 ORTHO05D006166 2.2e-77 293.5 224 67.9
DCAR_008707 Daucus carota HOM05D005073 ORTHO05D006166 2.8e-77 293.1 239 65.7
Lsat_1_v5_gn_6_102120 Lactuca sativa HOM05D005073 ORTHO05D006166 1.8e-76 290.4 358 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2622 Anthoceros agrestis HOM05D005073 ORTHO05D006166 8.6e-74 281.6 228 63.2
Mapoly0034s0014 Marchantia polymorpha HOM05D005073 ORTHO05D006166 2.1e-72 276.9 236 60.6
CBR_g9146 Chara braunii HOM05D005073 ORTHO05D006166 2.8e-72 276.6 240 60.4
Pp3c13_12510 Physcomitrium patens HOM05D005073 ORTHO05D006166 2.3e-71 273.5 239 60.7
Pp3c13_12516 Physcomitrium patens HOM05D005073 ORTHO05D006166 2.3e-71 273.5 239 60.7
BcaC08g47633 Brassica carinata HOM05D005073 ORTHO05D006166 1.6e-67 260.8 245 61.2
SMO137G0212 Selaginella moellendorffii HOM05D005073 ORTHO05D006166 2.6e-62 243.4 242 54.1
Cre16.g681238 Chlamydomonas reinhardtii HOM05D005073 ORTHO05D006166 4.7e-56 222.6 236 51.3
MBI02_g30882_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 4.1e-52 209.5 238 55.5
PRCOL_00000127 Prasinoderma coloniale HOM05D005073 ORTHO05D006166 2.7e-51 206.8 238 49.6
MCO14G420 Micromonas commoda HOM05D005073 ORTHO05D006166 4.7e-48 196.1 265 44.2
QL12p035939 Quercus lobata HOM05D005073 ORTHO05D006166 3.5e-43 179.9 127 72.4
QL12p035942 Quercus lobata HOM05D005073 ORTHO05D006166 7.3e-41 172.2 112 79.5
vmacro21228 Vaccinium macrocarpon HOM05D005073 ORTHO05D006166 3.6e-32 143.3 82 86.6
C09p47800 Brassica napus HOM05D005073 ORTHO05D006166 3.0e-26 123.6 172 46.5
A03p65370 Brassica napus HOM05D005073 ORTHO05D006166 1.3e-24 118.2 172 45.9
BraA03t15591Z Brassica rapa HOM05D005073 ORTHO05D006166 1.3e-24 118.2 172 45.9
C08p22880 Brassica napus HOM05D005073 ORTHO05D006166 6.2e-24 115.9 179 44.1
BolC8t49924H Brassica oleracea HOM05D005073 ORTHO05D006166 6.2e-24 115.9 179 44.1
C05p36400 Brassica napus HOM05D005073 ORTHO05D006166 1.1e-23 115.2 175 45.1
BcaC05g27652 Brassica carinata HOM05D005073 ORTHO05D006166 4.0e-23 113.2 177 43.5
Rhsim06G0085400 Rhododendron simsii HOM05D005073 ORTHO05D006166 6.9e-23 112.5 153 43.8
BcaC07g39279 Brassica carinata HOM05D005073 ORTHO05D006166 2.0e-22 110.9 167 43.7
A09p41080 Brassica napus HOM05D005073 ORTHO05D006166 2.0e-22 110.9 140 47.9
Duzib093G1393 Durio zibethinus HOM05D005073 ORTHO05D006166 2.0e-22 110.9 165 44.8
BcaC06g36777 Brassica carinata HOM05D005073 ORTHO05D006166 6.4e-21 105.9 176 42.0
BolC7t40457H Brassica oleracea HOM05D005073 ORTHO05D006166 6.4e-21 105.9 176 42.6
BolC7t40456H Brassica oleracea HOM05D005073 ORTHO05D006166 2.7e-19 100.5 173 42.2
Hma1.2p1_0120F.1_g057040 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 8.1e-16 89.0 63 66.7
MD15G1355000 Malus domestica HOM05D005073 ORTHO05D006166 6.9e-15 85.9 62 66.1
Actinidia10299 Actinidia chinensis HOM05D005073 ORTHO05D006166 7.6e-14 82.4 92 52.2
Cfa027202 Carpinus fangiana HOM05D005073 ORTHO05D006166 3.8e-13 80.1 256 28.5
BraA09t39601Z Brassica rapa HOM05D005073 ORTHO05D006166 4.9e-13 79.7 112 45.5
A04p08580 Brassica napus HOM05D005073 ORTHO05D006166 8.4e-13 79.0 112 45.5
BraA04t16552Z Brassica rapa HOM05D005073 ORTHO05D006166 8.4e-13 79.0 112 45.5
MBI18_g42472_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 1.4e-07 61.6 41 82.9


User provided reference genes

Program Settings