Gene: Os08g0407000
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os08g0407000
- Transcript Identifier Os08t0407000-01
- Gene Type Coding gene
- Location chr08 : 19456437-19459969 : positive
Gene Family Information
- ID HOM05D005073
- #Genes/#Species 147/96
- Phylogenetic origin
- ID ORTHO05D006166
- #Genes/#Species 146/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Os08t0407000-01
- MSU-ID LOC_Os08g31460.1
- symbol PDD
- uniprot Q6Z9X4
Descriptions
- Description tRNA-modifying GTPase belonging to the TrmE (tRNA modification E) family
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008033 | IEA | GOA Database | tRNA processing | |
| GO:0006400 | IEA | GOA Database | tRNA modification | |
| GO:0006400 | IEA | InterPro | tRNA modification | |
| GO:0002098 | IBA | GOA Database | tRNA wobble uridine modification | |
| GO:0030488 | IBA | GOA Database | tRNA methylation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0005525 | IEA | GOA Database | GTP binding | |
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0003924 | IEA | GOA Database | GTPase activity | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | IBA | GOA Database | cytosol | |
| GO:0005737 | IBA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR025867 | MnmE, helical domain |
| IPR004520 | tRNA modification GTPase MnmE |
| IPR018948 | GTP-binding protein TrmE, N-terminal |
| IPR027368 | tRNA modification GTPase MnmE domain 2 |
| IPR031168 | TrmE-type guanine nucleotide-binding domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR005225 | Small GTP-binding protein domain |
| IPR027266 | GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 |
| IPR006073 | GTP binding domain |
| Mapman id | Description |
|---|---|
| 16.11.3.1.2 | RNA processing.organelle machinery.RNA modification.tRNA modification.GTPase (TrmE) |