Gene: AT1G78010

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G78010
  • Transcript Identifier AT1G78010.1
  • Gene Type Coding gene
  • Location Chr1 : 29333535-29336297 : positive

Gene Family Information

  • ID HOM05D005073
  • #Genes/#Species 147/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G78010.1
  • Alias TrmE
  • uniprot Q66GQ1

Descriptions

  • Description tRNA modification GTPase
  • Computational description tRNA modification GTPase, putative; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: small GTPase mediated signal transduction, tRNA modification; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), tRNA modification GTPase TrmE (InterPro:IPR004520), GTP-binding protein TrmE, N-terminal (InterPro:IPR018948), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G12080.1); Has 37224 Blast hits to 31482 proteins in 3092 species: Archae - 387; Bacteria - 27903; Metazoa - 467; Fungi - 287; Plants - 322; Viruses - 0; Other Eukaryotes - 7858 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002098
IBA
Gene OntologytRNA wobble uridine modification1
GO:0030488
IBA
Gene OntologytRNA methylation1
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0006400
IEA
GOA DatabasetRNA modification
GO:0006400
IEA
InterProtRNA modification

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003924
IEA
Gene OntologyGTPase activity
GO:0003924
IEA
InterProGTPase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005829
IBA
Gene Ontologycytosol1
GO:0005737
IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR025867 MnmE, helical domain
IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1
IPR006073 GTP binding domain
IPR018948 GTP-binding protein TrmE, N-terminal
IPR005225 Small GTP-binding protein domain
IPR004520 tRNA modification GTPase MnmE
IPR031168 TrmE-type guanine nucleotide-binding domain
IPR027368 tRNA modification GTPase MnmE domain 2
Mapman id Description
16.11.3.1.2 RNA processing.organelle machinery.RNA modification.tRNA modification.GTPase (TrmE)