Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0004220 Simmondsia chinensis HOM05D005073 ORTHO05D006166 1.6e-127 459.5 241 100.0
EL10Ac1g01681 Beta vulgaris HOM05D005073 ORTHO05D006166 6.2e-92 341.3 233 74.2
Ciclev10003846m.g Citrus clementina HOM05D005073 ORTHO05D006166 8.1e-92 340.9 233 75.1
QL12p035942 Quercus lobata HOM05D005073 ORTHO05D006166 1.4e-91 340.1 232 74.1
Hund26651 Selenicereus undatus HOM05D005073 ORTHO05D006166 1.8e-91 339.7 233 73.8
AUR62034358 Chenopodium quinoa HOM05D005073 ORTHO05D006166 4.0e-91 338.6 233 74.7
Nn1g05274 Nelumbo nucifera HOM05D005073 ORTHO05D006166 4.0e-91 338.6 233 74.2
AUR62022347 Chenopodium quinoa HOM05D005073 ORTHO05D006166 8.9e-91 337.4 233 73.8
CiPaw.05G232900 Carya illinoinensis HOM05D005073 ORTHO05D006166 2.6e-90 335.9 233 74.2
GSVIVG01008990001 Vitis vinifera HOM05D005073 ORTHO05D006166 1.3e-89 333.6 233 72.5
Sabra02G0073100 Salix brachista HOM05D005073 ORTHO05D006166 2.2e-89 332.8 233 72.1
TAR381G0980 Trochodendron aralioides HOM05D005073 ORTHO05D006166 2.9e-89 332.4 233 73.0
PSO447G0212 Papaver somniferum HOM05D005073 ORTHO05D006166 1.9e-88 329.7 233 73.4
Cpa.g.sc66.92 Carica papaya HOM05D005073 ORTHO05D006166 2.4e-88 329.3 233 71.7
PSO210G7769 Papaver somniferum HOM05D005073 ORTHO05D006166 2.4e-88 329.3 233 73.0
HanXRQChr10g0278501 Helianthus annuus HOM05D005073 ORTHO05D006166 4.1e-88 328.6 233 71.7
MD15G1355000 Malus domestica HOM05D005073 ORTHO05D006166 4.1e-88 328.6 233 72.1
CANSAT54G2794 Cannabis sativa HOM05D005073 ORTHO05D006166 5.4e-88 328.2 234 73.1
Aqoxy1G01853 Aquilegia oxysepala HOM05D005073 ORTHO05D006166 4.6e-87 325.1 233 72.1
ClCG03G008990 Citrullus lanatus HOM05D005073 ORTHO05D006166 4.6e-87 325.1 233 70.0
Potri.002G092600 Populus trichocarpa HOM05D005073 ORTHO05D006166 1.0e-86 323.9 233 71.2
Duzib041G0650 Durio zibethinus HOM05D005073 ORTHO05D006166 2.3e-86 322.8 233 70.0
Cc10_g05860 Coffea canephora HOM05D005073 ORTHO05D006166 3.0e-86 322.4 233 71.2
CSS0000538 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 3.9e-86 322.0 233 70.4
CSS0031049 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 3.9e-86 322.0 233 70.4
Prupe.1G511900 Prunus persica HOM05D005073 ORTHO05D006166 3.9e-86 322.0 233 72.5
Actinidia30750 Actinidia chinensis HOM05D005073 ORTHO05D006166 8.6e-86 320.9 233 71.7
Gorai.009G239900 Gossypium raimondii HOM05D005073 ORTHO05D006166 8.6e-86 320.9 233 70.0
Thecc.08G112000 Theobroma cacao HOM05D005073 ORTHO05D006166 1.1e-85 320.5 233 70.0
COL.COLO4_16466 Corchorus olitorius HOM05D005073 ORTHO05D006166 1.5e-85 320.1 233 70.0
CsaV3_5G023620 Cucumis sativus L. HOM05D005073 ORTHO05D006166 1.5e-85 320.1 233 68.2
MD08G1177300 Malus domestica HOM05D005073 ORTHO05D006166 1.9e-85 319.7 233 71.7
Gohir.A05G229400 Gossypium hirsutum HOM05D005073 ORTHO05D006166 2.5e-85 319.3 233 70.0
DCAR_008707 Daucus carota HOM05D005073 ORTHO05D006166 3.3e-85 318.9 233 69.1
Manes.18G070400 Manihot esculenta HOM05D005073 ORTHO05D006166 3.3e-85 318.9 233 71.2
TPR.G34614 Trifolium pratense HOM05D005073 ORTHO05D006166 4.3e-85 318.5 236 69.5
FAN04G2698 Fragaria x ananassa HOM05D005073 ORTHO05D006166 7.3e-85 317.8 233 70.0
Glyma.06G106000 Glycine max HOM05D005073 ORTHO05D006166 7.3e-85 317.8 234 69.7
Hma1.2p1_0120F.1_g057030 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 7.3e-85 317.8 231 69.7
Hma1.2p1_0120F.1_g057040 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 7.3e-85 317.8 231 69.7
Lj4C715T1 Lonicera japonica HOM05D005073 ORTHO05D006166 7.3e-85 317.8 233 68.7
Lalb_Chr23g0270691 Lupinus albus HOM05D005073 ORTHO05D006166 9.5e-85 317.4 235 69.8
Medtr3g073790 Medicago truncatula HOM05D005073 ORTHO05D006166 9.5e-85 317.4 236 68.6
Psat5g137200 Pisum sativum HOM05D005073 ORTHO05D006166 9.5e-85 317.4 236 69.1
RcHm_v2.0_Chr7g0239951 Rosa chinensis HOM05D005073 ORTHO05D006166 9.5e-85 317.4 233 70.4
ECA246G0226 Erigeron canadensis HOM05D005073 ORTHO05D006166 1.2e-84 317.0 231 68.0
FAN18G0258 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.2e-84 317.0 233 70.4
FAN13G1954 Fragaria x ananassa HOM05D005073 ORTHO05D006166 4.7e-84 315.1 233 69.5
MBI02_g30882_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 4.7e-84 315.1 233 69.1
SalBow7G0210 Salvia bowleyana HOM05D005073 ORTHO05D006166 8.1e-84 314.3 233 68.2
arahy.Tifrunner.gnm1.ann1.K8DV01 Arachis hypogaea HOM05D005073 ORTHO05D006166 1.1e-83 313.9 236 68.2
arahy.Tifrunner.gnm1.ann1.T10PLA Arachis hypogaea HOM05D005073 ORTHO05D006166 1.1e-83 313.9 236 68.2
Migut.C00179 Erythranthe guttata HOM05D005073 ORTHO05D006166 1.1e-83 313.9 234 68.4
MELO3C022795.2 Cucumis melo HOM05D005073 ORTHO05D006166 1.8e-83 313.2 233 67.0
Oeu024557.1 Olea europaea HOM05D005073 ORTHO05D006166 1.8e-83 313.2 225 70.7
Lj1g0017290 Lotus japonicus HOM05D005073 ORTHO05D006166 2.3e-83 312.8 236 68.2
FvH4_5g38010 Fragaria vesca HOM05D005073 ORTHO05D006166 3.1e-83 312.4 233 70.0
SGA_v2.0_scaffold48G18021 Striga asiatica HOM05D005073 ORTHO05D006166 4.0e-83 312.0 233 68.2
Ca_15226_v3 Cicer arietinum L. HOM05D005073 ORTHO05D006166 6.8e-83 311.2 236 66.5
Os08g0407000 Oryza sativa ssp. japonica HOM05D005073 ORTHO05D006166 8.9e-83 310.8 233 66.1
Nitab4.5_0009824g0010 Nicotiana tabacum HOM05D005073 ORTHO05D006166 4.4e-82 308.5 233 65.2
FAN08G1532 Fragaria x ananassa HOM05D005073 ORTHO05D006166 9.9e-82 307.4 245 66.5
Peaxi162Scf00310g00019 Petunia axillaris HOM05D005073 ORTHO05D006166 9.9e-82 307.4 234 66.7
Eucgr.F02969 Eucalyptus grandis HOM05D005073 ORTHO05D006166 1.3e-81 307.0 233 69.1
ATR0564G350 Amborella trichopoda HOM05D005073 ORTHO05D006166 4.9e-81 305.1 233 69.1
Sopen04g028940 Solanum pennellii HOM05D005073 ORTHO05D006166 1.4e-80 303.5 235 66.0
VMungo1309G2662 Vigna mungo HOM05D005073 ORTHO05D006166 1.4e-80 303.5 253 64.0
Lsat_1_v5_gn_6_102120 Lactuca sativa HOM05D005073 ORTHO05D006166 2.4e-80 302.8 230 65.7
Nitab4.5_0000469g0190 Nicotiana tabacum HOM05D005073 ORTHO05D006166 3.2e-80 302.4 233 65.2
Sed0012840 Sechium edule HOM05D005073 ORTHO05D006166 3.2e-80 302.4 219 70.3
PGR044G0799 Punica granatum HOM05D005073 ORTHO05D006166 4.1e-80 302.0 236 68.6
Zm00001eb178820 Zea mays HOM05D005073 ORTHO05D006166 9.2e-80 300.8 233 63.1
Rhsim06G0085400 Rhododendron simsii HOM05D005073 ORTHO05D006166 2.7e-79 299.3 233 67.8
unitig_0.g2069 Utricularia gibba HOM05D005073 ORTHO05D006166 2.7e-79 299.3 234 65.0
THA.LOC104810083 Tarenaya hassleriana HOM05D005073 ORTHO05D006166 3.5e-79 298.9 239 66.9
PGSC0003DMG400009470 Solanum tuberosum HOM05D005073 ORTHO05D006166 4.6e-79 298.5 235 63.8
vmacro21228 Vaccinium macrocarpon HOM05D005073 ORTHO05D006166 3.0e-78 295.8 276 59.4
HPP92_016434 Vanilla planifolia HOM05D005073 ORTHO05D006166 6.6e-78 294.7 233 62.2
CDE03G0055 Ceratophyllum demersum HOM05D005073 ORTHO05D006166 1.5e-77 293.5 233 66.1
Aa31LG4G8070 Aethionema arabicum HOM05D005073 ORTHO05D006166 3.3e-77 292.4 235 63.8
AT1G78010 Arabidopsis thaliana HOM05D005073 ORTHO05D006166 4.3e-77 292.0 236 62.7
BcaC08g47633 Brassica carinata HOM05D005073 ORTHO05D006166 4.7e-76 288.5 234 64.1
C06p51930 Brassica napus HOM05D005073 ORTHO05D006166 4.7e-76 288.5 234 64.1
BolC6t40215H Brassica oleracea HOM05D005073 ORTHO05D006166 4.7e-76 288.5 234 64.1
BraA07t31846Z Brassica rapa HOM05D005073 ORTHO05D006166 4.7e-76 288.5 233 63.9
A07p43250 Brassica napus HOM05D005073 ORTHO05D006166 1.1e-75 287.3 234 64.1
Sp5g33150 Schrenkiella parvula HOM05D005073 ORTHO05D006166 1.1e-75 287.3 237 62.9
AL2G38280 Arabidopsis lyrata HOM05D005073 ORTHO05D006166 1.8e-75 286.6 236 61.9
SEGI_22824 Sequoiadendron giganteum HOM05D005073 ORTHO05D006166 3.1e-75 285.8 234 62.8
Thhalv10018349m.g Eutrema salsugineum HOM05D005073 ORTHO05D006166 5.8e-74 281.6 240 62.5
Atru.BG.242.p Acer truncatum HOM05D005073 ORTHO05D006166 3.8e-73 278.9 232 63.4
HPP92_016476 Vanilla planifolia HOM05D005073 ORTHO05D006166 1.6e-71 273.5 224 61.2
Ah.16g109540 Amaranthus hybridus HOM05D005073 ORTHO05D006166 1.6e-63 246.9 177 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2622 Anthoceros agrestis HOM05D005073 ORTHO05D006166 1.0e-62 244.2 263 51.3
Pp3c13_12510 Physcomitrium patens HOM05D005073 ORTHO05D006166 1.1e-61 240.7 268 50.0
Pp3c13_12516 Physcomitrium patens HOM05D005073 ORTHO05D006166 1.1e-61 240.7 268 50.0
Haze_00571 Corylus avellana HOM05D005073 ORTHO05D006166 2.4e-56 223.0 168 70.8
CBR_g9146 Chara braunii HOM05D005073 ORTHO05D006166 3.2e-56 222.6 284 45.8
SGA_v2.0_scaffold24G10294 Striga asiatica HOM05D005073 ORTHO05D006166 4.2e-56 222.2 174 63.8
SMO137G0212 Selaginella moellendorffii HOM05D005073 ORTHO05D006166 1.8e-54 216.9 237 52.3
Cre16.g681238 Chlamydomonas reinhardtii HOM05D005073 ORTHO05D006166 1.1e-53 214.2 252 48.4
Gohir.D05G231700 Gossypium hirsutum HOM05D005073 ORTHO05D006166 3.1e-43 179.5 148 64.2
MELO3C027311.2 Cucumis melo HOM05D005073 ORTHO05D006166 1.4e-40 170.6 149 55.0
MCO14G420 Micromonas commoda HOM05D005073 ORTHO05D006166 1.6e-39 167.2 301 38.5
PRCOL_00000127 Prasinoderma coloniale HOM05D005073 ORTHO05D006166 2.7e-39 166.4 271 39.5
Mapoly0034s0013 Marchantia polymorpha HOM05D005073 ORTHO05D006166 5.7e-37 158.7 180 46.1
Glyma.04G105000 Glycine max HOM05D005073 ORTHO05D006166 1.7e-28 130.6 93 71.0
MELO3C027298.2 Cucumis melo HOM05D005073 ORTHO05D006166 2.8e-20 103.2 100 50.0
Ah.16g109530 Amaranthus hybridus HOM05D005073 ORTHO05D006166 8.0e-15 85.1 54 85.2
MELO3C033259.2 Cucumis melo HOM05D005073 ORTHO05D006166 6.7e-14 82.0 51 80.4
MELO3C029590.2 Cucumis melo HOM05D005073 ORTHO05D034916 1.2e-13 81.3 50 80.0
Actinidia10299 Actinidia chinensis HOM05D005073 ORTHO05D006166 3.1e-11 73.2 58 69.0
Cre16.g658450 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006626 2.1e-07 60.5 170 30.6
BolC2t09540H Brassica oleracea HOM05D005073 ORTHO05D006166 2.7e-07 60.1 48 62.5
C02p35240 Brassica napus HOM05D005073 ORTHO05D006166 8.8e-06 55.1 40 67.5


User provided reference genes

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