Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1332.4 649 100.0
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1224.9 647 90.4
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1224.5 647 91.2
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1221.1 647 90.7
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1213.0 647 89.8
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1212.2 648 89.5
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1205.7 650 89.7
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1192.2 647 88.6
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1191.0 649 87.7
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 649 87.2
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 648 86.0
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 645 87.4
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 649 86.1
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 645 86.4
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1179.1 648 85.6
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 649 87.4
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1177.9 643 87.4
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1177.9 650 87.1
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1177.9 645 85.9
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 645 86.4
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 650 88.2
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 649 87.5
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 645 85.9
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 645 85.9
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 645 86.4
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 647 86.6
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 645 85.7
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1174.1 645 87.1
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 645 86.7
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1173.3 645 86.5
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 645 86.4
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 645 86.4
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 647 86.6
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 645 86.0
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 645 85.6
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 647 86.4
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 649 85.4
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 645 85.9
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 645 85.9
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 647 86.6
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 647 86.4
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 645 85.9
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1164.8 649 85.8
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1163.7 648 85.8
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1163.7 645 85.6
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 648 85.3
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 648 85.5
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 649 87.1
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 648 85.3
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 647 85.9
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1160.2 649 85.4
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 643 85.7
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1159.1 648 85.2
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1157.9 646 86.1
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1157.5 645 85.6
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 649 84.4
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 645 85.1
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 645 86.2
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 641 86.7
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 648 84.9
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 646 86.4
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 642 85.8
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 649 84.3
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1152.9 645 85.1
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1152.9 645 85.6
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1152.9 643 85.7
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1150.6 647 85.2
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1150.6 645 84.3
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1148.7 647 84.1
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1148.7 647 84.1
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 643 85.4
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 650 84.8
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1146.3 643 85.2
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1145.6 644 83.9
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1145.2 648 85.3
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1144.8 646 83.9
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 646 84.2
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 650 84.5
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1142.9 648 85.3
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 647 83.8
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 645 83.4
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1139.4 644 83.9
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 646 83.3
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1136.3 648 83.3
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 647 83.5
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1132.5 645 84.0
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1131.3 652 83.9
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 648 82.7
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 648 82.7
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 645 84.0
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1127.5 589 90.3
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1127.1 717 77.0
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1127.1 645 83.6
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1126.3 648 82.7
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1124.8 648 82.6
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1124.0 648 82.3
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1105.5 585 89.4
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1104.0 642 82.7
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1100.5 594 88.9
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1098.6 651 81.0
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1095.9 647 81.3
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1095.9 647 81.6
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1084.3 643 82.4
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 1.0e-306 1056.2 648 78.4
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 2.8e-304 1048.1 672 75.7
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 4.1e-300 1034.2 613 80.8
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 2.9e-298 1028.1 599 81.1
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 8.6e-298 1026.5 540 89.3
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 1.4e-295 1019.2 583 82.8
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 3.1e-295 1018.1 597 81.1
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.0e-286 988.8 615 76.3
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 4.4e-286 987.6 613 78.6
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.7e-283 978.4 553 82.3
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 7.1e-252 874.0 475 86.5
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 2.2e-229 799.3 513 74.3
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 8.5e-197 691.0 424 80.4
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 6.3e-192 674.9 394 81.7
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 5.4e-191 671.8 585 59.1
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 9.3e-143 511.5 267 89.5
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.0e-125 454.9 577 46.3
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 2.7e-73 280.8 217 64.5
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.7e-67 261.5 125 94.4
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 5.2e-45 186.8 101 86.1
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.3e-43 182.2 148 60.1
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 7.8e-41 172.9 93 89.2
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 1.8e-37 161.8 150 60.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.5e-20 105.5 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.7e-19 102.1 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 2.3e-08 65.1 32 90.6


User provided reference genes

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