Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 1.4e-198 696.0 336 100.0
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 4.5e-165 584.7 322 84.8
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 8.7e-161 570.5 322 82.9
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 6.2e-159 564.3 322 82.3
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 2.4e-158 562.4 322 81.7
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 5.3e-158 561.2 322 81.4
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 2.0e-157 559.3 322 81.7
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 2.0e-157 559.3 322 81.7
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 5.8e-157 557.8 321 80.7
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 1.3e-156 556.6 322 79.8
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 2.9e-156 555.4 323 80.5
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 1.4e-155 553.1 322 80.7
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 2.5e-155 552.4 323 80.5
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 5.5e-155 551.2 322 80.7
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.0e-153 545.4 318 81.4
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 3.9e-153 545.0 326 78.2
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 6.7e-153 544.3 322 79.5
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 5.7e-152 541.2 324 80.2
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 2.8e-151 538.9 321 78.8
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 3.7e-151 538.5 319 77.7
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 3.7e-151 538.5 322 78.9
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 4.8e-151 538.1 322 77.3
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 4.8e-151 538.1 319 77.7
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 6.3e-151 537.7 322 78.9
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 8.2e-151 537.3 322 79.2
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 1.8e-150 536.2 322 79.2
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 2.4e-150 535.8 321 79.4
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 4.1e-150 535.0 320 78.4
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 5.3e-150 534.6 322 77.3
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 5.3e-150 534.6 322 77.6
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 1.5e-149 533.1 319 77.4
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 2.6e-149 532.3 319 77.1
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 3.4e-149 531.9 319 79.0
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 3.4e-149 531.9 322 77.3
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 5.9e-149 531.2 315 78.1
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 7.7e-149 530.8 322 78.0
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 1.0e-148 530.4 322 76.7
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 1.7e-148 529.6 319 77.4
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 2.2e-148 529.3 322 77.0
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 2.2e-148 529.3 322 77.3
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 5.0e-148 528.1 321 78.2
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 8.5e-148 527.3 319 76.5
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.1e-147 526.9 361 71.2
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 1.4e-147 526.6 319 77.7
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 1.9e-147 526.2 324 76.9
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 2.5e-147 525.8 322 75.8
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 3.2e-147 525.4 323 77.1
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 5.5e-147 524.6 322 77.0
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 5.5e-147 524.6 314 79.0
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 7.2e-147 524.2 319 77.1
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 7.2e-147 524.2 323 75.9
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 1.6e-146 523.1 322 76.1
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 2.1e-146 522.7 350 73.1
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 3.6e-146 521.9 319 76.5
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 4.6e-146 521.5 315 78.1
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 7.9e-146 520.8 319 77.1
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 1.8e-145 519.6 315 77.1
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 1.8e-145 519.6 319 76.2
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 3.0e-145 518.8 322 74.8
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 3.9e-145 518.5 322 76.4
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 5.1e-145 518.1 315 76.2
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 5.1e-145 518.1 322 75.8
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 6.7e-145 517.7 322 75.2
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 8.8e-145 517.3 322 74.8
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 1.1e-144 516.9 311 77.8
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 1.5e-144 516.5 323 75.2
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 1.5e-144 516.5 315 77.5
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 2.5e-144 515.8 322 77.0
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 5.7e-144 514.6 320 74.1
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 5.7e-144 514.6 315 76.5
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 7.4e-144 514.2 322 76.7
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 1.3e-143 513.5 322 76.4
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 1.3e-143 513.5 322 75.8
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 6.3e-143 511.1 355 69.6
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.1e-142 510.4 322 75.8
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 4.1e-142 508.4 319 73.7
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 4.1e-142 508.4 322 74.8
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 4.1e-142 508.4 322 74.8
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 5.3e-142 508.1 323 74.0
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 5.3e-142 508.1 323 74.0
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 5.3e-142 508.1 322 75.8
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 6.9e-142 507.7 322 74.8
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 1.2e-141 506.9 322 73.3
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 1.2e-141 506.9 319 75.2
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 2.0e-141 506.1 322 75.5
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 2.6e-141 505.8 324 76.5
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 2.6e-141 505.8 319 74.9
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 7.7e-141 504.2 312 74.7
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 1.3e-140 503.4 323 72.4
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 1.7e-140 503.1 319 74.0
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 1.7e-140 503.1 319 74.0
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 2.2e-140 502.7 319 73.0
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 2.9e-140 502.3 323 73.1
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 2.9e-140 502.3 315 73.7
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 3.8e-140 501.9 319 72.4
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 6.5e-140 501.1 311 76.2
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 8.5e-140 500.7 319 73.0
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 1.4e-139 500.0 319 73.0
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 1.9e-139 499.6 319 73.0
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 2.5e-139 499.2 319 73.0
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 4.2e-139 498.4 319 72.7
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 5.5e-139 498.0 326 73.3
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 7.2e-139 497.7 303 77.2
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 7.2e-139 497.7 303 77.2
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 7.2e-139 497.7 325 73.5
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 1.2e-138 496.9 319 72.7
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 2.1e-138 496.1 326 73.6
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 2.1e-138 496.1 320 72.2
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 3.6e-138 495.4 316 73.4
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 1.0e-137 493.8 336 69.6
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.8e-137 493.0 348 68.1
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 2.3e-137 492.7 325 71.4
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 3.0e-137 492.3 348 68.7
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 5.7e-136 488.0 318 70.8
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 2.4e-134 482.6 324 71.0
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 5.3e-134 481.5 266 83.5
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 7.0e-134 481.1 300 75.7
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 5.5e-131 471.5 313 68.4
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 1.4e-129 466.8 317 71.6
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 6.7e-129 464.5 327 69.7
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 2.6e-128 462.6 323 68.1
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 9.1e-126 454.1 315 66.0
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 2.0e-125 453.0 339 64.6
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 9.1e-118 427.6 266 72.6
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 3.8e-116 422.2 319 61.8
Lalb_Chr01g0000361 Lupinus albus HOM05D003957 ORTHO05D004833 1.9e-115 419.9 261 78.2
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 1.2e-112 410.6 311 64.6
Carub.0005s3012 Capsella rubella HOM05D003957 ORTHO05D004833 9.1e-110 401.0 262 73.7
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 3.8e-108 395.6 323 60.7
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 1.5e-107 393.7 290 68.3
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 2.6e-104 382.9 309 57.6
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 3.1e-102 375.9 272 65.4
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 9.5e-99 364.4 311 56.3
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 2.8e-98 362.8 276 59.8
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 1.1e-91 340.9 193 81.3
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 4.7e-90 335.5 322 54.0
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 8.9e-89 331.3 288 51.4
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 1.2e-88 330.9 307 52.1
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 4.9e-87 325.5 240 62.9
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 5.2e-73 278.9 173 72.3
MCO14G372 Micromonas commoda HOM05D003957 ORTHO05D004833 4.2e-70 269.2 314 45.2
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 6.4e-63 245.4 139 79.9
Ah.00g001360 Amaranthus hybridus HOM05D003957 ORTHO05D004833 4.6e-61 239.2 148 74.3
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 4.8e-58 229.2 298 45.0
Aa31LG11G7410 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.2e-53 214.5 153 64.7
PRCOL_00006504 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 3.9e-52 209.5 288 37.8
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 5.1e-52 209.1 520 27.9
FAN03G1487 Fragaria x ananassa HOM05D003957 ORTHO05D004833 6.2e-50 202.2 143 65.0
PRCOL_00000364 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 1.2e-45 188.0 294 37.1
MCO15G235 Micromonas commoda HOM05D003957 ORTHO05D004833 3.9e-44 183.0 348 33.3
Aa31LG11G7420 Aethionema arabicum HOM05D003957 ORTHO05D004833 3.3e-43 179.9 103 79.6
HPP92_013483 Vanilla planifolia HOM05D003957 ORTHO05D004833 4.5e-40 169.5 136 55.9
CSS0043854 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 7.6e-40 168.7 135 60.0
unitig_749.g13713 Utricularia gibba HOM05D003957 ORTHO05D004833 3.0e-36 156.8 241 39.4
CSS0024453 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.4e-28 131.3 76 80.3
CSS0028199 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.0e-23 115.2 75 69.3
arahy.Tifrunner.gnm1.ann1.2RNN62 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.3e-23 114.8 66 77.3
RcHm_v2.0_Chr1g0316481 Rosa chinensis HOM05D003957 ORTHO05D037444 1.3e-23 114.8 84 60.7
PRCOL_00003547 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 3.6e-21 106.7 238 29.4
vmacro21188 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 1.1e-19 101.7 82 59.8
BolC6t39673H Brassica oleracea HOM05D003957 ORTHO05D004833 1.8e-17 94.4 77 62.3
Prupe.2G015100 Prunus persica HOM05D002736 ORTHO05D003882 2.0e-16 90.9 57 70.2
unitig_749.g13714 Utricularia gibba HOM05D003957 ORTHO05D004833 1.5e-11 74.7 42 78.6
Thecc.09G345400 Theobroma cacao HOM05D003957 ORTHO05D037444 3.7e-10 70.1 53 58.5
QL04p008294 Quercus lobata HOM05D003957 ORTHO05D037444 4.1e-09 66.6 54 57.4
Sopen01g034430 Solanum pennellii HOM05D003957 ORTHO05D030633 7.0e-09 65.9 86 40.7
Cre06.g284800 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D044119 2.2e-07 60.8 194 28.4
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 2.2e-07 60.8 66 53.0
Sopen01g034450 Solanum pennellii HOM05D003957 ORTHO05D030633 6.5e-07 59.3 35 77.1
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.9e-06 57.8 35 74.3


User provided reference genes

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