Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2928.7 1490 100.0
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2219.9 1496 75.8
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2191.0 1498 74.9
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2178.3 1499 74.4
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2177.5 1499 74.3
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2177.1 1498 74.4
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2167.9 1492 74.7
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2159.4 1500 73.8
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2155.9 1496 73.5
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2155.2 1498 73.8
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2154.4 1499 73.7
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2154.4 1552 72.2
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2143.6 1499 73.6
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2143.2 1495 74.2
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2136.3 1498 72.6
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2135.5 1503 73.2
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2135.5 1495 72.8
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2125.5 1500 73.5
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2121.3 1479 73.4
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2120.9 1489 72.4
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2105.9 1486 72.8
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2103.2 1499 72.1
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2100.5 1481 73.2
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2095.5 1486 71.7
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2090.8 1499 71.3
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2088.2 1534 70.1
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2087.0 1487 71.6
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2084.7 1492 71.2
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2080.1 1493 71.7
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2080.1 1498 70.7
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2078.1 1498 71.2
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2072.7 1495 72.0
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2072.0 1573 69.0
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2070.8 1496 70.9
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2068.9 1497 70.3
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2067.4 1498 70.9
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2066.6 1498 70.9
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2066.6 1488 71.0
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2064.3 1499 70.0
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2057.7 1484 71.0
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2057.7 1487 70.4
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2057.7 1498 70.0
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2057.3 1487 70.4
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2053.5 1547 69.5
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2052.3 1492 70.6
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2051.2 1487 70.5
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2051.2 1487 70.3
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2047.3 1496 70.0
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2046.2 1449 73.0
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2044.2 1487 70.0
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2040.4 1484 70.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2034.6 1500 69.9
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2034.6 1495 69.7
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2032.7 1496 69.4
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2031.9 1495 69.3
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2030.4 1484 69.9
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2028.8 1495 69.6
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2026.5 1561 68.1
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2025.4 1490 69.7
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2023.8 1491 69.3
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2023.8 1528 68.7
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1996.5 1493 68.6
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1992.2 1487 68.6
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1987.2 1493 68.3
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1985.7 1487 67.7
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1985.3 1494 68.4
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 1985.3 1493 69.0
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1951.8 1485 67.7
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1950.3 1492 68.0
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1946.8 1495 66.9
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1946.0 1501 67.6
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1934.5 1492 67.2
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1934.5 1491 67.5
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1933.3 1493 67.5
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1933.3 1494 66.7
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1932.5 1490 67.0
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1932.1 1490 66.9
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1931.0 1500 67.4
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1929.1 1491 67.3
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1929.1 1501 67.5
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1928.7 1489 67.4
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1927.9 1492 67.0
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1927.1 1504 67.1
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1924.4 1499 67.1
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1924.4 1492 66.8
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1920.6 1499 66.9
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1919.8 1501 66.9
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1911.3 1501 66.8
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1908.3 1490 66.8
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1876.7 1473 65.7
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1872.8 1305 74.0
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1863.6 1463 66.7
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1855.9 1310 73.5
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1833.9 1503 64.0
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1828.1 1307 72.8
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1802.7 1277 72.3
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1799.3 1593 62.1
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1791.9 1479 62.5
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1764.2 1486 61.5
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1734.5 1296 69.4
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1717.2 1390 66.6
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1702.6 1223 71.9
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1694.1 1371 65.7
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1677.1 1442 60.3
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1661.7 1424 62.0
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1652.1 1441 61.2
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1541.2 1530 55.2
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1540.0 1519 54.6
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1506.9 988 76.1
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1384.8 1416 55.3
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1320.4 1213 57.2
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1315.8 1083 64.2
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1283.5 1314 53.7
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1261.1 1375 52.9
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1194.5 1375 51.2
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 5.5e-300 1035.0 1278 49.2
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.0e-298 1029.2 741 73.8
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 7.0e-287 991.5 847 59.7
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 1.7e-280 970.3 749 66.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 4.3e-244 849.4 770 60.3
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.9e-236 823.9 706 62.5
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.1e-230 803.9 579 68.7
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 4.2e-223 779.6 927 49.8
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 7.0e-194 682.6 611 59.1
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.6e-185 654.8 899 44.6
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.6e-182 644.8 596 58.1
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.2e-174 618.6 368 80.2
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.2e-158 565.5 746 44.9
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 7.5e-156 556.2 442 69.5
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.2e-148 532.3 476 61.1
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 7.6e-148 529.6 476 63.4
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 4.0e-133 480.7 569 50.1
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.5e-111 408.3 771 37.1
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.2e-97 362.8 1562 27.3
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 1.7e-94 352.4 1762 24.3
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.2e-90 338.2 444 45.3
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 3.0e-88 331.6 1606 25.2
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 3.3e-87 328.2 220 75.5
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.0e-80 306.6 349 49.6
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.3e-77 294.3 224 64.3
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.1e-69 268.1 232 59.5
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 4.5e-68 264.6 152 78.3
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 2.9e-67 261.9 161 73.9
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 4.2e-66 258.1 235 60.9
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.4e-63 248.4 270 53.7
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 4.4e-63 248.1 195 62.6
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 2.4e-45 189.1 101 86.1
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.9e-42 179.5 186 52.7
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 2.5e-42 179.1 185 55.1
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.3e-38 166.8 218 50.9
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.7e-35 156.4 159 51.6
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.4e-31 141.7 343 32.9
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 5.8e-31 141.4 707 23.3
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 9.9e-31 140.6 129 56.6
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 2.9e-30 139.0 121 60.3
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 1.9e-26 126.3 109 57.8
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 3.3e-26 125.6 102 64.7
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 6.2e-25 121.3 96 62.5
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 1.8e-24 119.8 56 92.9
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.9e-22 112.5 58 84.5
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.0e-19 104.0 67 70.1
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 7.6e-15 87.8 70 61.4
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.9e-14 85.9 59 76.3
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.6e-12 78.6 138 38.4
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.3e-11 76.3 53 64.2
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.3e-11 76.3 53 64.2
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 2.4e-08 66.2 34 82.4
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 5.8e-07 61.6 181 27.6
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 2.9e-06 59.3 50 60.0
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 4.9e-06 58.5 142 30.3


User provided reference genes

Program Settings