Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.9e-72 275.8 142 100.0
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 4.8e-28 128.3 91 71.4
Sc12g0007750 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.7e-23 112.5 100 63.0
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 8.8e-22 107.5 90 62.2
Sc23g0004730 Simmondsia chinensis HOM05D015224 ORTHO05D388619 8.6e-17 90.9 106 56.6
Sc23g0004550 Simmondsia chinensis HOM05D015224 ORTHO05D388671 4.2e-16 88.6 106 55.7
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 9.5e-16 87.4 67 71.6
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.5e-10 68.6 86 47.7
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.9e-10 68.2 80 50.0
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.9e-10 68.2 83 45.8
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 5.9e-10 68.2 94 43.6
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 2.9e-09 65.9 86 46.5
Sc12g0007940 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.5e-08 63.5 99 39.4
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 1.5e-08 63.5 112 36.6
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.9e-08 63.2 76 50.0
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.5e-08 62.8 85 43.5
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.3e-08 61.2 108 38.0
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 7.3e-08 61.2 91 40.7
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 9.5e-08 60.8 110 40.9
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 9.5e-08 60.8 112 34.8
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 1.2e-07 60.5 88 44.3
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.6e-07 60.1 88 42.0
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 1.6e-07 60.1 109 37.6
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 1.6e-07 60.1 88 43.2
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 1.6e-07 60.1 88 43.2
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 1.6e-07 60.1 88 43.2
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 2.1e-07 59.7 88 42.0
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 2.1e-07 59.7 78 46.2
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 2.1e-07 59.7 78 47.4
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 2.1e-07 59.7 88 43.2
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 2.8e-07 59.3 108 40.7
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 2.8e-07 59.3 108 40.7
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 2.8e-07 59.3 108 40.7
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 2.8e-07 59.3 108 40.7
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 2.8e-07 59.3 108 40.7
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 2.8e-07 59.3 88 40.9
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.8e-07 59.3 88 42.0
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.8e-07 59.3 96 36.5
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 3.6e-07 58.9 108 38.9
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 3.6e-07 58.9 87 43.7
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 3.6e-07 58.9 87 43.7
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 3.6e-07 58.9 87 43.7
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 3.6e-07 58.9 108 38.9
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 4.7e-07 58.5 87 42.5
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 4.7e-07 58.5 87 41.4
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 4.7e-07 58.5 87 40.2
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.7e-07 58.5 79 39.2
Sc26g0003240 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.7e-07 58.5 95 41.1
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 4.7e-07 58.5 88 42.0
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 6.1e-07 58.2 87 42.5
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 6.1e-07 58.2 87 42.5
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 6.1e-07 58.2 108 38.9
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 6.1e-07 58.2 87 41.4
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 6.1e-07 58.2 87 41.4
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 6.1e-07 58.2 92 43.5
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 6.1e-07 58.2 87 42.5
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 6.1e-07 58.2 87 43.7
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 8.0e-07 57.8 108 38.9
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 8.0e-07 57.8 108 38.9
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 8.0e-07 57.8 112 33.9
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 8.0e-07 57.8 87 42.5
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 8.0e-07 57.8 88 40.9
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 8.0e-07 57.8 88 40.9
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.0e-06 57.4 88 40.9
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 1.0e-06 57.4 109 37.6
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 1.0e-06 57.4 87 42.5
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 1.0e-06 57.4 87 42.5
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 1.0e-06 57.4 109 37.6
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 1.0e-06 57.4 88 40.9
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 1.0e-06 57.4 88 42.0
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.0e-06 57.4 87 43.7
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 1.0e-06 57.4 87 42.5
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 1.0e-06 57.4 88 42.0
Sc09g0006000 Simmondsia chinensis HOM05D015224 ORTHO05D388293 1.0e-06 57.4 65 47.7
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 1.4e-06 57.0 88 39.8
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.4e-06 57.0 109 37.6
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 1.4e-06 57.0 87 41.4
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.4e-06 57.0 80 41.2
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 1.8e-06 56.6 108 38.0
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 1.8e-06 56.6 108 38.9
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.8e-06 56.6 87 41.4
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 1.8e-06 56.6 88 39.8
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 1.8e-06 56.6 87 41.4
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 1.8e-06 56.6 88 40.9
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 1.8e-06 56.6 98 37.8
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 1.8e-06 56.6 87 40.2
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.8e-06 56.6 94 40.4
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 1.8e-06 56.6 88 42.0
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 1.8e-06 56.6 88 40.9
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 2.3e-06 56.2 87 41.4
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 2.3e-06 56.2 87 41.4
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 2.3e-06 56.2 87 39.1
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.3e-06 56.2 88 38.6
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 2.3e-06 56.2 109 36.7
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 2.3e-06 56.2 109 37.6
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 2.3e-06 56.2 87 43.7
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 2.3e-06 56.2 87 44.8
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 2.3e-06 56.2 87 41.4
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 2.3e-06 56.2 88 39.8
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 2.3e-06 56.2 88 39.8
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 2.3e-06 56.2 88 39.8
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 2.3e-06 56.2 94 42.6
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 2.3e-06 56.2 87 42.5
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 3.0e-06 55.8 88 40.9
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 3.0e-06 55.8 109 36.7
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.0e-06 55.8 109 36.7
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.0e-06 55.8 109 36.7
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 3.0e-06 55.8 109 36.7
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 3.0e-06 55.8 109 36.7
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 3.0e-06 55.8 109 39.4
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.0e-06 55.8 85 37.6
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 3.0e-06 55.8 76 42.1
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 3.0e-06 55.8 88 42.0
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 3.0e-06 55.8 87 41.4
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 3.0e-06 55.8 98 36.7
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 4.0e-06 55.5 109 35.8
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.0e-06 55.5 95 41.1
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.0e-06 55.5 79 41.8
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 4.0e-06 55.5 88 39.8
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 4.0e-06 55.5 88 39.8
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 4.0e-06 55.5 88 42.0
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 5.2e-06 55.1 109 36.7
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 5.2e-06 55.1 96 38.5
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 5.2e-06 55.1 88 38.6
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 5.2e-06 55.1 88 38.6
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 5.2e-06 55.1 98 36.7
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 5.2e-06 55.1 87 41.4
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 5.2e-06 55.1 116 35.3
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 5.2e-06 55.1 87 40.2
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 6.8e-06 54.7 88 38.6
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 6.8e-06 54.7 88 39.8
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 6.8e-06 54.7 87 40.2
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 6.8e-06 54.7 87 41.4
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 8.9e-06 54.3 96 37.5
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 8.9e-06 54.3 87 39.1
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 8.9e-06 54.3 88 38.6
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 8.9e-06 54.3 80 45.0


User provided reference genes

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