Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 0.0e+00 1352.4 679 100.0
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 6.1e-161 572.0 658 49.5
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.5e-154 550.1 746 44.6
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 3.6e-153 546.2 741 43.2
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 5.1e-152 542.3 750 43.2
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 5.7e-151 538.9 752 43.9
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.5e-148 530.8 740 43.9
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.7e-148 528.5 713 43.5
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.0e-147 525.8 743 44.0
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 6.5e-147 525.4 724 46.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 7.2e-146 521.9 766 42.6
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.0e-144 518.1 701 44.5
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.4e-144 517.7 693 44.2
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.9e-144 516.2 755 42.9
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 3.9e-144 516.2 752 42.4
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.5e-143 514.2 752 42.3
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 2.0e-143 513.8 734 42.0
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 6.3e-142 508.8 748 42.9
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 8.2e-142 508.4 784 41.3
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 8.2e-142 508.4 713 44.2
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.1e-141 508.1 740 42.0
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.1e-141 508.1 744 41.4
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.4e-141 506.9 735 41.9
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 7.0e-141 505.4 723 43.7
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 9.1e-141 505.0 750 41.2
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.5e-140 504.2 750 41.2
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.6e-140 503.4 716 42.6
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 4.5e-140 502.7 717 43.4
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 5.9e-140 502.3 759 42.8
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.7e-139 500.7 749 43.1
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 2.2e-139 500.4 705 43.3
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 5.0e-139 499.2 720 42.8
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.1e-138 498.0 723 43.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.1e-138 498.0 757 41.2
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.5e-138 497.7 768 42.4
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.9e-138 497.3 726 42.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 2.5e-138 496.9 731 42.8
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.2e-138 496.5 720 42.6
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 3.2e-138 496.5 748 41.7
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 9.4e-138 495.0 888 36.9
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.4e-136 491.1 736 41.2
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.8e-136 490.7 728 42.6
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 9.7e-135 485.0 720 41.9
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 6.3e-134 482.3 724 41.9
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 7.0e-133 478.8 717 41.8
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.6e-132 477.6 720 41.7
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 5.9e-132 475.7 750 41.2
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.7e-131 474.2 674 43.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.2e-131 473.8 670 44.6
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 2.9e-131 473.4 716 42.2
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 3.8e-131 473.0 658 45.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.1e-130 471.5 675 43.3
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.2e-130 469.9 668 42.5
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.6e-129 467.6 681 42.6
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 3.6e-129 466.5 669 43.2
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.7e-129 466.1 769 39.4
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 8.0e-129 465.3 632 43.4
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 5.2e-128 462.6 761 38.9
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 8.8e-128 461.8 668 41.5
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.2e-127 461.5 682 43.4
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 3.4e-127 459.9 761 39.0
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 8.3e-126 455.3 709 40.9
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.4e-125 454.5 614 43.6
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.4e-125 454.5 691 41.1
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.4e-125 454.5 674 42.4
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.8e-125 454.1 676 41.9
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.4e-125 453.8 670 42.1
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 7.0e-125 452.2 694 42.9
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 2.0e-124 450.7 669 41.3
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 5.0e-123 446.0 660 41.7
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 8.5e-123 445.3 747 39.1
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.1e-122 444.9 679 42.3
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 4.2e-122 443.0 710 39.9
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.6e-121 439.9 724 39.8
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 8.0e-121 438.7 693 39.8
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.8e-120 437.6 725 41.0
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.0e-119 434.1 661 41.6
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 6.3e-118 429.1 649 40.5
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.8e-117 427.6 664 41.4
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 5.0e-115 419.5 669 39.9
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.3e-114 416.8 612 42.6
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 4.2e-114 416.4 673 40.4
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 4.2e-114 416.4 682 39.9
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 5.6e-114 416.0 549 45.0
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 2.3e-112 410.6 708 39.3
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 8.9e-112 408.7 437 49.7
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 3.4e-111 406.8 709 37.8
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 7.5e-111 405.6 663 40.1
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 9.8e-111 405.2 680 39.6
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.2e-110 404.1 677 38.1
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.9e-110 402.9 694 38.6
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 4.9e-110 402.9 667 39.9
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 8.3e-110 402.1 673 37.9
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.6e-108 397.9 658 39.7
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 3.5e-108 396.7 660 39.4
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 5.9e-108 396.0 689 38.6
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 2.9e-107 393.7 422 50.2
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 2.9e-107 393.7 540 43.5
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.5e-106 391.3 687 38.7
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.3e-106 389.8 566 42.9
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 7.8e-100 369.0 617 38.9
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 7.8e-100 369.0 660 37.7
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 6.6e-99 365.9 651 37.8
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 3.3e-98 363.6 720 36.0
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 9.5e-98 362.1 674 35.8
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.1e-96 358.6 495 45.3
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.0e-96 356.7 464 46.6
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.9e-94 350.5 699 35.9
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 3.7e-94 350.1 644 37.0
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 9.5e-90 335.5 673 34.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.0e-87 327.8 390 46.7
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 6.4e-86 322.8 696 35.3
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.4e-85 319.7 735 32.7
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.1e-84 317.8 455 43.1
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 6.8e-80 302.8 557 37.9
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.2e-79 302.0 721 31.2
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 1.3e-75 288.5 383 45.2
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.3e-73 282.0 555 37.7
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 3.8e-70 270.4 699 31.6
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.8e-65 253.4 345 42.9
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.5e-63 248.4 321 46.4
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 4.9e-62 243.4 726 30.0
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.6e-57 228.4 359 40.9
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.2e-53 213.8 394 35.8
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 5.5e-53 213.4 346 39.6
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 7.9e-52 209.5 820 25.9
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 6.3e-49 199.9 187 57.2
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.5e-45 188.0 604 27.5
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.4e-37 162.2 228 42.5
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 8.2e-33 146.4 139 52.5
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.1e-32 146.0 256 33.6
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 5.0e-30 137.1 429 30.1
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 4.2e-29 134.0 145 47.6
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 5.5e-29 133.7 86 69.8
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.2e-28 132.5 86 68.6
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 7.9e-28 129.8 239 36.8
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.8e-27 126.3 244 35.7
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.5e-26 125.6 275 35.3
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-26 125.2 557 25.0
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 3.7e-25 120.9 212 34.9
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.4e-24 119.0 446 25.8
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.8e-24 118.6 126 52.4
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.6e-18 98.2 203 32.0
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.1e-16 91.3 230 27.4
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 9.4e-13 79.7 172 32.6
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 2.1e-12 78.6 73 53.4
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.1e-12 77.0 330 23.3
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 8.8e-11 73.2 342 25.1
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.6e-10 71.6 74 50.0
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 3.4e-10 71.2 76 52.6
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 9.8e-10 69.7 88 38.6
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.3e-09 69.3 131 36.6
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.8e-09 68.2 65 55.4
Carub.0005s0182 Capsella rubella HOM05D000082 ORTHO05D000038 3.1e-08 64.7 88 40.9
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.1e-08 64.3 56 58.9
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.2e-07 62.8 148 31.8
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 2.9e-06 58.2 130 29.2


User provided reference genes

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