Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 3.8e-88 328.2 171 100.0
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 1.7e-48 196.4 179 63.7
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.1e-45 187.2 178 58.4
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 6.8e-45 184.5 180 59.4
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.2e-44 183.7 178 62.4
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.0e-44 183.0 178 57.3
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 5.8e-44 181.4 179 62.0
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 5.8e-44 181.4 179 58.7
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 5.8e-44 181.4 177 58.8
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 9.9e-44 180.6 177 57.1
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.7e-43 179.9 179 58.1
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 1.7e-43 179.9 180 56.7
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.8e-43 178.7 177 57.1
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.4e-42 176.8 176 58.5
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.4e-42 176.8 180 57.2
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 2.4e-42 176.0 182 57.1
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 4.2e-42 175.3 174 56.9
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 4.2e-42 175.3 174 56.9
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 4.2e-42 175.3 179 55.9
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 5.4e-42 174.9 179 57.5
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.4e-42 174.9 177 57.1
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 9.3e-42 174.1 179 58.1
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 9.3e-42 174.1 177 55.9
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 1.2e-41 173.7 177 55.9
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.1e-41 172.9 177 55.9
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.5e-41 172.2 176 56.8
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 4.6e-41 171.8 171 59.1
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.6e-41 171.8 177 55.9
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 4.6e-41 171.8 179 54.7
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 6.0e-41 171.4 182 54.4
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 7.8e-41 171.0 176 56.8
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 7.8e-41 171.0 181 54.7
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.0e-40 170.6 181 55.8
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.3e-40 170.2 179 58.1
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.7e-40 169.9 180 58.9
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.7e-40 169.9 179 56.4
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 2.3e-40 169.5 173 57.8
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 3.0e-40 169.1 181 55.2
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 3.0e-40 169.1 178 55.1
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 5.1e-40 168.3 176 56.2
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 5.1e-40 168.3 176 56.2
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 6.6e-40 167.9 174 56.3
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 8.7e-40 167.5 180 54.4
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 8.7e-40 167.5 176 54.0
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 8.7e-40 167.5 176 54.0
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 1.1e-39 167.2 171 56.7
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 1.5e-39 166.8 179 55.3
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.5e-39 166.8 178 55.6
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.5e-39 166.8 221 49.8
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.9e-39 166.4 179 55.3
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 2.5e-39 166.0 179 54.7
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 2.5e-39 166.0 181 53.0
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 2.5e-39 166.0 178 54.5
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 4.3e-39 165.2 177 54.2
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 5.6e-39 164.9 181 53.6
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 5.6e-39 164.9 176 55.1
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 9.6e-39 164.1 180 52.2
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 9.6e-39 164.1 173 56.1
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.3e-38 163.7 179 54.7
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.6e-38 163.3 182 52.7
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 2.1e-38 162.9 182 56.0
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.1e-38 162.9 174 56.3
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.8e-38 162.5 179 53.1
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 3.6e-38 162.2 180 52.2
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 3.6e-38 162.2 180 52.2
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.6e-38 162.2 180 52.2
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 4.8e-38 161.8 179 52.5
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 8.1e-38 161.0 171 57.3
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.1e-37 160.6 180 51.1
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 1.1e-37 160.6 181 52.5
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 1.4e-37 160.2 148 61.5
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.8e-37 159.8 182 51.1
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 2.4e-37 159.5 175 54.3
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 2.4e-37 159.5 179 54.2
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.1e-37 159.1 179 54.2
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 3.1e-37 159.1 182 54.9
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 5.3e-37 158.3 175 53.7
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 9.0e-37 157.5 182 51.1
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.2e-36 157.1 186 51.6
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.5e-36 156.8 177 52.0
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.5e-36 156.8 179 53.1
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 3.4e-36 155.6 176 54.0
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 7.6e-36 154.5 171 53.2
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 9.9e-36 154.1 171 54.4
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.7e-35 153.3 182 50.5
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 2.9e-35 152.5 180 50.0
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 6.4e-35 151.4 171 53.8
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.9e-34 149.8 182 50.5
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 3.5e-33 145.6 149 53.7
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 3.5e-33 145.6 173 50.9
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 7.8e-33 144.4 196 44.9
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 7.8e-33 144.4 156 53.8
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.0e-32 144.1 211 44.5
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.7e-32 143.3 182 49.5
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.1e-32 141.7 153 54.9
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 2.5e-31 139.4 150 55.3
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 7.3e-31 137.9 173 49.1
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 9.6e-31 137.5 155 52.3
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.3e-30 137.1 146 56.2
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.1e-29 132.5 153 52.9
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 5.3e-29 131.7 170 47.1
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 8.4e-27 124.4 137 51.8
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 5.4e-26 121.7 157 49.7
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 3.0e-24 115.9 75 73.3
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 3.9e-24 115.5 171 41.5
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.1e-23 114.0 75 69.3
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.1e-23 114.0 206 38.8
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.9e-23 113.2 138 49.3
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 4.3e-23 112.1 107 57.9
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.7e-22 109.0 171 45.0
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 1.4e-21 107.1 69 76.8
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 6.9e-21 104.8 74 68.9
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 9.0e-21 104.4 176 39.2
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 5.8e-20 101.7 214 36.9
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 1.3e-19 100.5 170 38.2
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 6.0e-17 91.7 70 58.6
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.9e-15 86.7 59 72.9
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.2e-14 81.3 158 38.6
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.1e-13 80.9 161 39.1
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.8e-13 80.1 76 56.6
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 4.1e-13 79.0 44 79.5
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 9.0e-13 77.8 173 35.8
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.3e-11 73.9 62 62.9
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 2.2e-11 73.2 133 40.6
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.1e-10 70.9 51 70.6
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.2e-10 68.9 47 74.5
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 4.2e-10 68.9 64 57.8
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.5e-10 68.6 66 57.6
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.2e-09 67.4 47 72.3
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.9e-08 62.4 43 72.1
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.1e-07 60.8 88 45.5
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 5.7e-07 58.5 33 84.8


User provided reference genes

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