Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.6e-135 486.1 250 100.0
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.9e-92 341.7 249 73.1
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.4e-91 338.2 245 71.8
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.4e-91 338.2 245 71.8
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 7.1e-91 337.8 253 71.5
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.2e-90 337.0 251 72.1
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.2e-90 337.0 250 73.2
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-90 336.7 245 73.1
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 3.5e-90 335.5 257 70.0
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 5.1e-89 331.6 258 70.5
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.5e-88 330.1 254 70.5
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.9e-88 329.7 254 71.3
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 2.5e-88 329.3 246 70.7
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.3e-88 327.8 254 70.1
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.2e-87 327.0 215 77.2
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.1e-87 326.2 258 71.3
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.6e-87 325.5 253 70.0
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 4.7e-87 325.1 252 69.4
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 6.2e-87 324.7 235 74.9
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.1e-86 323.9 238 72.3
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.1e-86 323.9 252 71.0
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 2.4e-86 322.8 246 72.0
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 3.1e-86 322.4 256 69.1
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.1e-86 322.4 249 71.1
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.1e-86 322.4 262 66.8
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 3.1e-86 322.4 234 73.9
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 4.0e-86 322.0 251 69.3
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 4.0e-86 322.0 257 67.7
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 5.2e-86 321.6 248 69.0
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.9e-86 321.2 260 70.8
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.2e-85 320.5 258 67.8
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.5e-85 320.1 256 68.0
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.6e-85 319.3 255 68.6
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 2.6e-85 319.3 248 68.5
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 3.4e-85 318.9 238 72.7
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 3.4e-85 318.9 221 73.3
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 4.4e-85 318.5 239 72.8
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 9.9e-85 317.4 233 73.8
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.3e-84 317.0 250 68.4
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.7e-84 316.6 261 67.4
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.2e-84 316.2 251 69.3
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.9e-84 315.8 249 68.7
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 3.8e-84 315.5 256 70.3
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 3.8e-84 315.5 246 70.7
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.8e-84 315.5 260 66.5
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 4.9e-84 315.1 232 70.3
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 4.9e-84 315.1 256 68.4
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 6.4e-84 314.7 246 69.1
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 8.4e-84 314.3 255 68.6
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 8.4e-84 314.3 249 68.7
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 8.4e-84 314.3 256 66.8
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-83 313.9 195 80.5
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.4e-83 313.5 180 87.2
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.4e-83 313.5 199 77.4
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.9e-83 313.2 261 65.1
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 4.2e-83 312.0 245 69.0
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 5.4e-83 311.6 262 68.3
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 5.4e-83 311.6 241 70.1
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 5.4e-83 311.6 180 85.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 9.3e-83 310.8 249 66.7
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.2e-82 310.5 248 67.7
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.2e-82 310.5 249 67.9
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.7e-82 309.3 184 85.9
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 3.5e-82 308.9 260 66.5
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 3.5e-82 308.9 263 65.8
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 4.6e-82 308.5 245 66.9
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.0e-81 307.4 200 77.5
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.0e-81 307.4 258 67.4
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.3e-81 307.0 252 65.1
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 3.9e-81 305.4 250 69.6
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 6.6e-81 304.7 186 80.6
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 8.7e-81 304.3 251 68.1
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 1.1e-80 303.9 246 67.1
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.3e-80 302.4 252 64.3
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 3.3e-80 302.4 254 65.7
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 4.3e-80 302.0 246 67.1
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 7.3e-80 301.2 171 86.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 7.3e-80 301.2 183 82.0
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 9.6e-80 300.8 258 65.1
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 9.6e-80 300.8 252 65.1
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 9.6e-80 300.8 254 66.9
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.3e-79 300.4 237 68.4
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.3e-79 300.4 207 73.9
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.1e-79 299.7 252 63.5
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 2.8e-79 299.3 251 65.3
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 4.8e-79 298.5 234 67.1
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 6.2e-79 298.1 249 64.7
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 6.2e-79 298.1 234 67.1
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 6.2e-79 298.1 254 63.8
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-78 296.6 249 65.1
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 2.4e-78 296.2 248 64.9
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 5.3e-78 295.0 252 63.1
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 6.9e-78 294.7 254 63.4
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 6.9e-78 294.7 178 82.0
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 9.0e-78 294.3 258 65.1
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.4e-77 292.4 253 63.6
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.9e-76 289.3 245 66.1
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 3.5e-74 282.3 220 66.8
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.5e-74 282.3 215 67.9
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.3e-73 280.4 229 68.1
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.1e-72 277.3 238 64.3
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.5e-72 276.9 173 82.1
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.6e-72 275.0 235 63.0
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.3e-71 273.9 251 61.8
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.6e-71 273.5 251 61.8
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.1e-71 273.1 245 64.1
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.8e-71 272.7 181 74.6
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.8e-71 272.7 186 74.7
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 4.8e-71 271.9 244 63.1
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.8e-70 270.0 247 61.5
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.4e-70 269.6 243 62.6
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 2.4e-70 269.6 255 60.4
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 4.0e-70 268.9 257 61.5
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.3e-70 268.5 253 61.3
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 5.3e-70 268.5 257 61.1
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 5.3e-70 268.5 257 61.1
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.9e-70 268.1 249 60.2
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 6.9e-70 268.1 245 61.6
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.5e-69 266.9 256 59.8
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 3.4e-69 265.8 227 65.2
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.5e-69 265.4 243 62.1
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 5.8e-69 265.0 260 59.2
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.3e-68 263.8 183 71.0
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.7e-68 263.5 183 71.0
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.2e-68 263.1 257 61.1
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.9e-68 262.7 194 67.5
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.9e-68 261.9 258 59.3
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 5.5e-67 258.5 256 58.2
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.2e-66 257.3 259 55.6
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.7e-66 256.1 173 75.1
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 3.5e-66 255.8 259 57.9
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 6.0e-66 255.0 244 61.9
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.3e-65 253.1 218 60.6
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 6.7e-65 251.5 148 84.5
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.3e-63 247.3 260 60.0
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.1e-62 244.2 150 80.0
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 6.9e-62 241.5 182 64.3
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 3.1e-54 216.1 191 64.9
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 1.7e-52 210.3 226 53.1
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 2.9e-52 209.5 131 76.3
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 4.2e-51 205.7 155 67.7
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 7.2e-51 204.9 121 83.5
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.8e-49 200.3 194 59.8
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.8e-49 200.3 122 86.1
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 4.3e-48 195.7 183 62.3
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.7e-47 192.6 203 55.2
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 3.1e-46 189.5 194 58.8
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.0e-44 184.5 221 49.3
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 3.6e-42 176.0 259 49.0
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 4.6e-42 175.6 230 48.3
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.0e-41 174.5 126 73.0
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.8e-41 173.7 169 60.9
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 3.9e-41 172.6 173 58.4
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 5.7e-32 142.1 169 52.1
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 3.8e-28 129.4 80 80.0
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 4.2e-27 125.9 79 77.2
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 9.4e-27 124.8 76 80.3
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.1e-26 123.6 103 59.2
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.6e-26 122.9 112 61.6
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 1.8e-22 110.5 135 52.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.5e-21 105.9 141 47.5
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 5.5e-19 99.0 125 48.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 2.6e-16 90.1 205 39.0
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.1e-14 84.7 50 84.0
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.3e-12 77.0 203 35.5
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 2.6e-08 63.5 68 44.1
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.6e-08 63.5 107 37.4
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 2.6e-08 63.5 123 35.0
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 4.4e-08 62.8 147 32.0
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 7.5e-08 62.0 54 59.3
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-06 58.2 52 59.6
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-06 57.4 54 51.9


User provided reference genes

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