Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1683.3 843 100.0
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1490.7 843 85.9
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1463.7 842 84.4
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1454.1 842 83.8
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1445.6 944 77.5
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1422.5 843 81.9
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1421.4 843 82.9
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1409.8 839 82.7
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1399.0 846 81.2
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 841 80.7
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1394.4 841 80.7
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1394.0 848 81.0
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1386.7 842 81.0
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1383.2 846 80.3
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1383.2 905 76.0
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1380.5 849 80.9
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1380.2 842 80.9
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1379.4 843 80.2
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1378.2 848 80.0
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1375.1 850 80.1
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1374.4 849 80.6
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1374.0 848 79.7
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1373.6 841 79.9
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1372.8 853 80.8
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1371.3 848 79.6
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1369.8 843 79.5
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1368.6 841 79.9
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1367.1 846 79.6
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1365.9 866 78.9
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1362.8 849 78.9
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1360.9 848 79.1
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1360.5 842 79.5
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 850 78.2
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 921 74.4
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1356.3 846 79.6
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1355.9 847 79.8
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1355.9 842 79.6
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1354.3 842 79.2
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1354.0 846 78.7
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1353.2 849 79.2
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1352.8 849 80.0
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1352.8 862 77.1
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1350.1 846 77.8
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1350.1 869 77.1
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1347.8 849 78.6
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1347.0 842 79.1
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1346.3 846 77.8
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1346.3 846 78.3
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1345.5 839 78.4
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1340.9 842 78.6
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1338.9 862 76.7
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1338.2 839 78.3
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1338.2 850 78.4
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1338.2 858 76.7
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 893 74.4
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1335.1 862 76.8
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1334.7 844 77.7
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1333.5 850 78.8
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1332.4 862 76.7
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1330.1 847 77.6
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1328.9 849 78.0
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 854 77.6
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1323.5 861 77.4
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1321.6 849 77.6
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1317.0 839 76.4
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1316.6 854 77.0
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1315.8 843 76.4
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1311.2 921 71.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1308.9 869 75.4
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1302.7 907 73.4
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1300.4 921 71.1
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 858 74.4
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1277.3 789 78.5
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1274.6 859 73.3
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1270.8 859 73.2
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1268.4 859 73.1
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1268.1 839 74.4
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1267.7 859 73.1
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1267.7 859 73.1
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1267.7 859 73.1
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1266.5 859 72.9
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1263.4 859 72.8
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1263.4 859 72.8
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1261.9 839 72.9
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1258.8 859 72.6
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1258.4 858 72.7
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1252.3 842 74.5
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1234.9 765 80.3
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1231.1 854 70.4
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1166.8 730 78.2
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1135.6 838 69.5
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1105.9 841 64.4
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1095.1 841 62.7
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 3.5e-307 1058.1 879 63.1
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.7e-301 1038.1 855 65.4
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 2.5e-297 1025.4 840 59.5
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 8.3e-293 1010.4 1145 52.0
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.8e-285 985.3 856 63.0
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 5.9e-275 951.0 686 70.6
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 5.2e-271 937.9 626 72.7
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 6.4e-269 931.0 799 61.1
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 2.4e-252 875.9 730 63.3
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.5e-238 830.1 606 68.0
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 8.2e-216 754.6 675 59.0
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.4e-215 753.1 476 76.5
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 7.2e-196 688.3 432 80.3
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.6e-195 687.2 460 76.7
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 6.1e-195 685.3 409 79.0
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.4e-191 674.1 607 58.6
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 2.7e-179 633.3 850 41.9
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.0e-169 600.5 360 84.7
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 8.6e-165 585.1 337 86.1
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 3.1e-162 576.6 360 75.0
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 7.5e-161 572.0 860 39.0
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.2e-134 485.0 830 36.0
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.4e-127 461.5 435 56.8
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.7e-115 420.2 331 58.6
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.4e-114 418.3 1000 29.9
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 3.3e-108 397.1 588 42.7
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 6.5e-104 382.9 367 58.3
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 5.5e-103 379.8 264 68.2
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.3e-99 366.3 328 54.9
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 9.1e-82 309.3 242 64.5
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.7e-80 305.1 165 90.3
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.6e-78 298.5 218 66.5
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.7e-76 290.0 317 48.6
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.2e-73 282.3 157 81.5
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 3.7e-43 181.0 97 86.6
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 2.6e-36 158.3 101 75.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 3.4e-36 157.9 108 69.4
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.6e-32 143.7 120 58.3
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-31 141.4 84 79.8
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 5.6e-31 140.6 98 70.4
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 9.5e-31 139.8 94 71.3
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.8e-29 135.6 86 74.4
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 6.8e-29 133.7 94 68.1
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 2.0e-28 132.1 67 88.1
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 2.6e-28 131.7 168 48.8
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 7.6e-28 130.2 95 69.5
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 4.9e-27 127.5 91 67.0
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.3e-27 126.7 185 45.4
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.6e-25 122.5 96 66.7
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-25 122.1 125 60.8
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 6.0e-25 120.6 108 59.3
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.0e-24 118.2 96 64.6
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 2.5e-23 115.2 91 65.9
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 4.3e-23 114.4 75 68.0
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 2.4e-21 108.6 96 59.4
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 4.0e-21 107.8 68 72.1
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 3.8e-19 101.3 61 73.8
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 6.0e-17 94.0 78 62.8
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-15 89.7 115 44.3
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-15 89.0 51 78.4
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 3.3e-15 88.2 51 78.4
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 5.6e-15 87.4 67 59.7
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 4.8e-14 84.3 87 54.0
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 4.8e-14 84.3 87 54.0
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 1.2e-12 79.7 50 80.0
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 2.0e-12 79.0 48 83.3
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 7.1e-10 70.5 87 50.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 9.3e-10 70.1 37 86.5
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 6.0e-09 67.4 79 46.8
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 5.6e-07 60.8 41 73.2
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.3e-07 60.5 34 82.4
Rhsim07G0116000 Rhododendron simsii HOM05D000382 ORTHO05D037450 4.8e-06 57.8 84 46.4


User provided reference genes

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