Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 1.5e-169 599.4 292 100.0
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 2.2e-128 462.6 289 77.2
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 5.5e-127 458.0 289 76.1
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 2.2e-123 446.0 292 73.6
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 2.8e-123 445.7 292 73.3
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 2.4e-122 442.6 289 73.4
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 2.4e-122 442.6 289 73.4
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 1.5e-121 439.9 288 76.4
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 2.0e-121 439.5 289 73.4
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 1.3e-120 436.8 289 71.3
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 3.8e-120 435.3 289 73.0
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 1.9e-119 433.0 289 72.3
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 1.9e-119 433.0 289 72.3
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 3.2e-119 432.2 292 71.6
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 4.2e-119 431.8 292 71.6
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 1.2e-118 430.3 289 72.0
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 2.1e-118 429.5 291 71.5
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 2.7e-118 429.1 292 69.5
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 7.9e-118 427.6 290 71.4
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 1.4e-117 426.8 287 70.4
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 1.8e-117 426.4 291 71.1
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 1.8e-117 426.4 292 70.5
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 2.3e-117 426.0 294 71.4
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 3.9e-117 425.2 291 71.1
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 3.9e-117 425.2 292 70.2
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 1.1e-116 423.7 289 69.6
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 2.0e-116 422.9 291 70.4
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 5.7e-116 421.4 289 70.2
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 2.2e-115 419.5 293 70.0
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 2.8e-115 419.1 289 72.0
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 4.8e-115 418.3 289 69.2
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.8e-115 418.3 292 69.5
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 8.2e-115 417.5 289 70.6
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 1.1e-114 417.2 291 69.1
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.1e-114 417.2 290 71.0
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.8e-114 416.4 289 70.2
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.2e-113 413.7 292 69.2
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.5e-113 413.3 290 70.0
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.5e-113 413.3 290 70.0
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 1.5e-113 413.3 290 71.7
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 3.4e-113 412.1 291 70.8
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 4.5e-113 411.8 289 69.2
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 7.7e-113 411.0 292 68.2
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 7.7e-113 411.0 291 67.7
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 1.3e-112 410.2 290 67.9
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 1.3e-112 410.2 291 70.1
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 2.2e-112 409.5 289 70.6
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 2.2e-112 409.5 290 67.9
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.9e-112 409.1 291 67.7
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 1.1e-111 407.1 291 68.7
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 1.1e-111 407.1 293 66.6
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.4e-111 406.8 293 67.2
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.4e-111 406.8 291 67.7
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.5e-111 406.0 292 67.1
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 1.2e-110 403.7 296 65.5
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 2.1e-110 402.9 290 68.3
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 2.1e-110 402.9 296 65.5
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 3.6e-110 402.1 293 67.9
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 3.6e-110 402.1 290 67.6
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 6.1e-110 401.4 289 67.5
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 1.8e-109 399.8 292 67.1
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 3.9e-109 398.7 296 66.2
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.5e-108 396.7 295 65.8
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 7.4e-108 394.4 292 67.5
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 7.4e-108 394.4 291 66.7
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 2.8e-107 392.5 289 67.1
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 4.8e-107 391.7 289 65.7
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 4.8e-107 391.7 294 65.6
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 1.1e-106 390.6 292 64.4
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 1.4e-106 390.2 296 64.2
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 1.8e-106 389.8 279 68.1
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 2.4e-106 389.4 289 64.7
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 4.1e-106 388.7 294 67.3
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 4.1e-106 388.7 292 64.4
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 1.2e-105 387.1 295 62.7
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 4.5e-105 385.2 292 66.4
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 4.5e-105 385.2 293 65.2
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 5.9e-105 384.8 294 63.9
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 2.2e-104 382.9 300 64.3
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 1.9e-103 379.8 291 64.3
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 7.2e-103 377.9 291 64.9
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 7.2e-103 377.9 291 63.6
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 7.2e-103 377.9 289 65.1
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 7.2e-103 377.9 288 63.9
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.6e-102 376.7 289 64.7
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 2.1e-102 376.3 290 64.5
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 2.7e-102 375.9 294 63.3
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 2.7e-102 375.9 294 63.3
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 6.1e-102 374.8 289 63.7
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 1.8e-101 373.2 292 63.4
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.3e-101 372.9 289 61.9
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 5.2e-101 371.7 293 62.8
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 5.2e-101 371.7 291 64.6
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 8.8e-101 370.9 288 63.2
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 2.0e-100 369.8 294 62.9
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 4.4e-100 368.6 289 64.0
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 7.5e-100 367.9 289 63.0
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 9.7e-100 367.5 290 64.8
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 9.7e-100 367.5 289 63.7
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 1.7e-99 366.7 294 62.2
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 1.7e-99 366.7 322 58.4
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 1.7e-99 366.7 289 63.3
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 2.2e-99 366.3 291 63.2
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 2.2e-99 366.3 294 61.2
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 2.2e-99 366.3 295 62.0
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 2.8e-99 365.9 290 61.7
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 3.7e-99 365.5 292 61.3
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 4.8e-99 365.2 293 61.4
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 2.4e-98 362.8 292 63.4
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 7.0e-98 361.3 293 62.1
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 9.1e-98 360.9 291 63.6
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 1.2e-97 360.5 255 68.6
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.2e-97 360.5 289 61.6
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 4.5e-97 358.6 289 62.3
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 1.0e-96 357.5 287 62.7
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 2.2e-96 356.3 289 62.6
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 1.1e-95 354.0 293 61.8
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 1.1e-95 354.0 290 63.1
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 1.9e-95 353.2 293 60.8
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 3.2e-95 352.4 295 61.4
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.2e-94 350.5 289 61.2
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 1.6e-94 350.1 290 60.7
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 1.6e-94 350.1 298 61.4
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 6.1e-94 348.2 290 60.3
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 1.0e-93 347.4 290 60.3
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 6.8e-93 344.7 290 60.3
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 1.2e-92 344.0 288 60.1
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 2.6e-92 342.8 303 60.7
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 1.7e-91 340.1 296 60.5
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 1.7e-91 340.1 296 60.5
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 8.3e-91 337.8 294 60.5
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 8.3e-91 337.8 288 57.3
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 1.8e-90 336.7 289 58.5
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 3.5e-89 332.4 296 59.1
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.7e-88 330.1 286 57.0
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 2.9e-88 329.3 292 58.6
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 9.5e-87 324.3 317 55.8
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 2.7e-86 322.8 290 56.6
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 1.2e-84 317.4 295 56.3
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 1.8e-82 310.1 293 55.3
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 6.6e-80 301.6 290 53.8
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 7.3e-79 298.1 289 52.2
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 1.6e-78 297.0 285 56.8
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 1.6e-78 297.0 285 56.8
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 5.2e-77 292.0 284 56.3
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 8.9e-77 291.2 301 54.5
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 3.9e-72 275.8 286 53.8
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 7.3e-71 271.6 291 50.9
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 6.8e-69 265.0 270 53.0
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 1.9e-66 256.9 286 48.3
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 8.6e-64 248.1 258 52.3
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 6.8e-61 238.4 262 50.4
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 3.7e-59 232.6 198 59.6
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 3.2e-58 229.6 293 43.7
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.1e-57 226.9 198 59.1
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 3.5e-57 226.1 282 44.3
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 8.6e-56 221.5 339 38.9
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.1e-55 221.1 215 54.0
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 9.6e-47 191.4 288 40.3
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 4.9e-35 152.5 238 40.3
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 7.1e-34 148.7 237 40.5
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-31 141.4 237 39.2
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 1.3e-30 137.9 297 31.6
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.3e-30 137.9 110 54.5
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 1.4e-26 124.4 104 61.5
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 1.4e-26 124.4 104 61.5
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 3.2e-26 123.2 104 60.6
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 4.6e-25 119.4 145 51.7
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 6.9e-21 105.5 64 70.3
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 2.6e-20 103.6 58 72.4
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 4.5e-20 102.8 70 61.4
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 1.4e-18 97.8 149 46.3
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 3.2e-18 96.7 295 27.5
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 3.9e-16 89.7 88 58.0
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 3.3e-15 86.7 43 81.4
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 5.7e-15 85.9 91 56.0
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 4.1e-13 79.7 56 66.1
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 3.8e-11 73.2 346 24.6
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 4.2e-10 69.7 39 74.4
ECA233G0490 Erigeron canadensis HOM05D003678 ORTHO05D004340 7.9e-09 65.5 81 45.7
C05p46930 Brassica napus HOM05D003678 ORTHO05D016118 7.4e-07 58.9 35 71.4
BolC5t33423H Brassica oleracea HOM05D003678 ORTHO05D016118 7.4e-07 58.9 35 71.4
SHI21127 Sapria himalayana HOM05D003678 ORTHO05D004340 1.3e-06 58.2 36 61.1
BcaC08g45872 Brassica carinata HOM05D005572 ORTHO05D032868 2.8e-06 57.0 30 80.0
Pp3c17_19500 Physcomitrium patens HOM05D003678 ORTHO05D004340 8.2e-06 55.5 51 43.1


User provided reference genes

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