Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 2.6e-286 988.0 507 100.0
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 2.8e-139 499.6 491 57.4
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 1.2e-137 494.2 503 57.1
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 2.8e-134 483.0 502 54.2
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 4.9e-123 445.7 509 52.3
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.9e-122 443.7 508 51.4
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 2.1e-121 440.3 506 51.8
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 5.2e-117 425.6 495 49.1
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 1.7e-115 420.6 514 47.9
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 3.7e-115 419.5 501 47.9
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 4.1e-114 416.0 500 48.2
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 9.2e-114 414.8 503 49.9
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 9.2e-114 414.8 504 49.4
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 1.2e-113 414.5 508 47.4
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 2.7e-113 413.3 542 47.0
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 3.0e-112 409.8 499 50.1
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 3.0e-112 409.8 506 47.2
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 5.1e-112 409.1 521 47.0
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 8.6e-112 408.3 508 46.7
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 8.6e-112 408.3 504 46.8
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 1.9e-111 407.1 508 47.2
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 9.6e-111 404.8 504 48.0
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 6.2e-110 402.1 503 49.9
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 1.4e-109 401.0 503 46.5
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 3.1e-109 399.8 502 48.0
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 3.1e-109 399.8 516 46.1
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 3.1e-109 399.8 505 45.5
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 4.0e-109 399.4 506 45.7
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 2.0e-108 397.1 505 47.9
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 1.4e-106 391.0 532 45.3
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 3.2e-106 389.8 509 46.6
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 7.1e-106 388.7 489 45.8
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 7.1e-106 388.7 508 46.9
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 2.1e-105 387.1 499 44.5
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 2.7e-105 386.7 508 45.9
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 7.8e-105 385.2 492 46.7
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 1.7e-104 384.0 512 45.9
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 2.3e-104 383.6 515 45.2
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 5.1e-104 382.5 477 47.4
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 8.7e-104 381.7 503 46.1
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 3.3e-103 379.8 515 45.2
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 2.1e-102 377.1 544 44.1
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 4.8e-102 375.9 510 44.5
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 6.2e-102 375.6 511 45.4
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 1.4e-101 374.4 650 38.8
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 3.1e-101 373.2 493 46.2
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 5.3e-101 372.5 516 45.2
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 6.9e-101 372.1 516 44.4
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 1.2e-100 371.3 523 45.9
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 2.2e-99 367.1 523 43.2
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 2.9e-99 366.7 493 46.2
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 1.1e-98 364.8 493 46.0
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 3.2e-98 363.2 513 43.9
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 4.6e-97 359.4 517 41.6
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 1.1e-95 354.8 496 43.8
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 1.9e-95 354.0 480 46.0
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 2.5e-95 353.6 508 42.3
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 3.3e-95 353.2 505 42.6
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 1.4e-93 347.8 521 43.0
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 3.1e-93 346.7 511 43.4
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.5e-92 344.4 524 42.2
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 3.4e-92 343.2 494 41.9
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 3.8e-91 339.7 503 42.1
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 4.9e-91 339.3 497 41.6
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 3.9e-88 329.7 581 39.8
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 6.7e-88 328.9 492 43.7
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 8.7e-88 328.6 457 43.1
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 4.3e-87 326.2 512 41.8
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 7.4e-87 325.5 501 43.1
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 2.1e-86 323.9 502 41.2
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 2.8e-86 323.6 513 42.7
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 3.7e-86 323.2 545 39.8
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 4.8e-86 322.8 505 40.6
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 3.4e-84 316.6 502 40.2
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 1.7e-83 314.3 508 38.8
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.9e-83 312.8 435 43.2
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 1.1e-82 311.6 484 41.5
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 5.5e-82 309.3 598 36.0
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 2.6e-76 290.4 506 37.9
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.0e-75 288.5 506 37.0
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 1.7e-75 287.7 504 38.7
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 1.7e-75 287.7 508 36.6
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 2.2e-75 287.3 502 37.1
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 2.9e-75 287.0 422 44.3
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 7.2e-74 282.3 507 36.9
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 4.6e-73 279.6 506 36.2
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 7.9e-73 278.9 442 41.0
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 1.6e-70 271.2 512 35.9
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 4.8e-70 269.6 492 38.4
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 2.6e-68 263.8 455 36.5
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 1.3e-67 261.5 511 35.0
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 2.5e-66 257.3 491 35.6
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.5e-66 257.3 429 40.6
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 7.2e-66 255.8 423 40.4
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 1.1e-61 241.9 450 35.8
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 2.6e-60 237.3 423 37.8
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 2.2e-59 234.2 537 32.6
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 2.4e-53 214.2 445 34.6
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 4.5e-52 209.9 364 39.0
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 1.5e-50 204.9 275 40.0
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 5.5e-42 176.4 312 40.7
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 4.7e-41 173.3 501 30.1
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.9e-34 151.4 148 52.0
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 5.5e-34 149.8 234 46.2
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 3.0e-32 144.1 523 30.8
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 4.0e-32 143.7 133 51.1
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 5.6e-26 123.2 153 44.4
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 7.3e-26 122.9 159 42.8
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 1.1e-21 109.0 92 55.4
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.7e-19 101.7 99 55.6
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 3.0e-19 100.9 83 55.4
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 3.9e-19 100.5 573 24.6
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 6.6e-19 99.8 99 55.6
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 1.9e-18 98.2 85 61.2
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 7.5e-15 86.3 70 62.9
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 6.0e-12 76.6 52 65.4
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.0e-11 74.3 51 64.7
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 4.4e-07 60.5 54 53.7


User provided reference genes

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