Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.5e-89 332.8 168 100.0
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.5e-89 332.8 168 100.0
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.7e-72 276.2 168 76.8
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.9e-71 272.7 163 79.1
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.2e-70 270.0 160 78.8
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.2e-70 270.0 168 76.2
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.7e-70 268.9 167 78.4
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 3.5e-70 268.5 164 77.4
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 4.6e-70 268.1 168 76.8
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 4.6e-70 268.1 160 80.0
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 6.0e-70 267.7 165 75.8
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 7.9e-70 267.3 166 75.9
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.0e-69 266.9 167 77.8
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.3e-69 266.5 168 76.8
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.3e-69 266.5 168 76.8
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.3e-69 266.5 160 78.8
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.8e-69 266.2 165 75.8
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.8e-69 266.2 159 79.9
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.8e-69 266.2 159 79.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 2.3e-69 265.8 168 75.0
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 3.0e-69 265.4 169 76.3
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 5.1e-69 264.6 167 76.6
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.7e-69 264.2 168 75.6
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 6.7e-69 264.2 168 76.2
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 8.7e-69 263.8 167 76.0
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.1e-68 263.5 167 74.9
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.5e-68 263.1 168 75.0
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 1.9e-68 262.7 166 74.7
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 3.3e-68 261.9 168 73.2
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 4.3e-68 261.5 161 77.6
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 7.4e-68 260.8 163 75.5
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 9.6e-68 260.4 167 75.4
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.3e-67 260.0 167 76.0
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.7e-67 258.5 165 75.2
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.7e-67 258.5 165 75.2
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 4.8e-67 258.1 168 72.0
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 8.2e-67 257.3 168 72.0
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 8.2e-67 257.3 165 75.2
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.1e-66 256.9 180 71.1
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.1e-66 256.9 168 72.0
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.4e-66 256.5 159 76.7
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.4e-66 256.5 165 75.2
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.1e-66 255.4 205 62.4
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.1e-66 255.4 205 62.4
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 6.9e-66 254.2 168 70.8
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 9.0e-66 253.8 167 74.3
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.3e-64 250.0 168 71.4
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.4e-63 246.5 163 71.2
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.4e-63 246.5 163 71.2
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.4e-63 246.5 162 73.5
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.9e-63 246.1 163 72.4
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.9e-63 246.1 163 70.6
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.5e-63 245.7 165 72.1
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 5.5e-63 244.6 157 73.9
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 5.5e-63 244.6 161 72.0
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.6e-62 243.0 161 72.7
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.1e-62 242.7 165 70.3
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 6.1e-62 241.1 166 69.9
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.3e-61 240.0 168 69.0
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.3e-61 240.0 168 67.3
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.3e-61 239.2 168 66.7
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 5.1e-61 238.0 163 70.6
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 6.7e-61 237.7 163 70.6
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 8.7e-61 237.3 168 70.2
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 8.7e-61 237.3 160 68.8
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.1e-60 236.9 167 70.7
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.1e-60 236.9 158 70.9
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.5e-60 236.5 162 68.5
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.3e-60 235.3 183 63.4
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 3.3e-60 235.3 196 61.7
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 4.3e-60 235.0 163 68.7
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 4.3e-60 235.0 160 68.8
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.6e-59 233.0 158 70.3
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.2e-59 232.6 161 68.9
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.4e-58 229.9 157 68.2
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.1e-58 228.8 160 66.9
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 4.1e-58 228.4 157 67.5
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 9.0e-58 227.3 161 65.8
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 9.0e-58 227.3 209 57.4
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.2e-57 226.9 160 64.4
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.2e-57 226.9 161 67.1
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.4e-57 225.3 156 64.7
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.5e-57 224.9 158 63.9
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 4.5e-57 224.9 158 63.9
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.5e-57 224.9 158 63.9
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 4.5e-57 224.9 160 66.9
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.7e-57 224.2 168 64.9
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.3e-56 223.4 159 66.0
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.8e-56 221.9 160 65.6
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 3.8e-56 221.9 159 64.2
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 5.0e-56 221.5 159 65.4
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 8.5e-56 220.7 164 64.0
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 8.5e-56 220.7 161 61.5
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.5e-56 220.7 165 63.0
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.9e-55 219.5 156 62.8
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 7.2e-55 217.6 161 63.4
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 2.1e-54 216.1 157 65.0
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.1e-54 216.1 167 61.1
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.1e-54 216.1 180 60.6
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 4.6e-54 214.9 157 63.1
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.0e-53 213.8 161 62.1
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.8e-53 213.0 157 65.0
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.8e-53 213.0 157 65.0
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 2.3e-53 212.6 160 61.9
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 5.1e-53 211.5 155 63.2
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 6.7e-53 211.1 159 64.2
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 6.7e-53 211.1 146 64.4
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.5e-52 209.9 159 63.5
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.3e-52 208.8 157 63.7
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.7e-52 208.0 161 59.6
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 4.8e-51 204.9 151 65.6
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.8e-50 203.0 156 59.0
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-49 200.3 160 59.4
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-49 199.5 159 60.4
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.5e-49 198.4 154 60.4
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 5.9e-49 198.0 159 59.1
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.5e-47 192.6 123 73.2
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.6e-46 189.9 127 73.2
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 3.0e-45 185.7 145 61.4
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.0e-45 185.7 159 56.6
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 5.1e-45 184.9 161 57.1
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.1e-42 177.2 162 51.2
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 8.5e-40 167.5 160 46.9
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.5e-39 166.8 131 59.5
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.2e-39 165.2 158 52.5
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.7e-38 162.5 156 53.2
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-38 162.5 129 58.9
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 4.7e-38 161.8 123 62.6
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.0e-38 161.0 133 59.4
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.4e-37 160.2 150 45.3
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 6.7e-37 157.9 163 48.5
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-36 156.8 135 54.1
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 2.6e-36 156.0 117 65.0
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 4.4e-36 155.2 162 46.9
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 7.5e-36 154.5 161 48.4
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.5e-36 154.5 165 49.7
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.2e-35 152.9 150 46.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-34 149.8 114 62.3
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.7e-33 144.4 118 58.5
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.3e-32 143.7 152 46.1
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.5e-31 140.2 155 38.7
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.5e-31 139.4 85 78.8
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 7.2e-31 137.9 83 79.5
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.4e-29 133.7 101 62.4
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 5.2e-29 131.7 84 76.2
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.0e-25 119.8 152 43.4
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 3.8e-24 115.5 91 61.5
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-23 112.8 87 59.8
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 7.2e-23 111.3 83 69.9
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 4.7e-22 108.6 76 64.5
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 3.7e-19 99.0 81 54.3
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-12 76.6 106 39.6
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.7e-12 75.1 64 56.2
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.7e-08 63.5 105 39.0
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 3.3e-07 59.3 55 54.5
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 3.3e-07 59.3 55 54.5
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 5.6e-07 58.5 44 63.6


User provided reference genes

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