Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 8.6e-142 506.9 244 100.0
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 2.2e-97 359.4 247 73.3
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 5.1e-94 348.2 265 67.9
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 6.7e-94 347.8 266 67.3
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 6.7e-94 347.8 266 67.3
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 6.7e-94 347.8 276 64.1
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 1.1e-93 347.1 265 67.5
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 1.5e-93 346.7 276 64.5
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.9e-93 346.3 266 67.3
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 1.9e-93 346.3 276 63.8
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 3.3e-93 345.5 275 65.8
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 3.3e-93 345.5 276 63.8
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 4.3e-93 345.1 275 64.4
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 5.6e-93 344.7 277 63.5
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 5.6e-93 344.7 267 65.2
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 5.6e-93 344.7 253 68.0
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 7.4e-93 344.4 257 67.7
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 1.3e-92 343.6 256 67.2
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.3e-92 343.6 266 66.9
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 2.8e-92 342.4 252 66.3
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 4.8e-92 341.7 274 64.6
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 4.8e-92 341.7 276 65.6
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 4.8e-92 341.7 264 65.2
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 6.2e-92 341.3 271 65.3
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 6.2e-92 341.3 274 64.2
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 4.0e-91 338.6 253 66.4
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 6.9e-91 337.8 265 66.0
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 1.5e-90 336.7 276 63.8
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.5e-90 336.7 278 62.9
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 1.5e-90 336.7 272 63.6
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 2.0e-90 336.3 266 65.8
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 3.4e-90 335.5 278 63.7
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 3.4e-90 335.5 278 62.9
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 4.5e-90 335.1 273 64.8
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 4.5e-90 335.1 276 63.8
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 5.8e-90 334.7 276 63.8
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 5.8e-90 334.7 273 61.5
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.0e-89 334.0 239 71.5
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 1.0e-89 334.0 273 61.5
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.3e-89 333.6 269 62.1
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 1.7e-89 333.2 263 63.9
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 1.7e-89 333.2 263 63.9
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 2.9e-89 332.4 276 62.7
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 2.9e-89 332.4 274 61.7
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 2.9e-89 332.4 278 62.6
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 2.9e-89 332.4 276 63.0
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 3.8e-89 332.0 263 64.3
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 6.5e-89 331.3 278 62.2
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 1.9e-88 329.7 263 63.1
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 2.5e-88 329.3 275 63.6
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 3.2e-88 328.9 266 63.9
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 3.2e-88 328.9 253 67.2
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 5.5e-88 328.2 276 61.2
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 7.1e-88 327.8 263 63.1
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 9.3e-88 327.4 276 62.7
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 2.1e-87 326.2 272 62.1
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 2.7e-87 325.9 267 63.7
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 3.5e-87 325.5 265 62.6
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 4.6e-87 325.1 255 66.7
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 4.6e-87 325.1 278 60.8
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 6.0e-87 324.7 253 64.8
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 7.9e-87 324.3 274 62.0
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 2.3e-86 322.8 271 62.0
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 2.3e-86 322.8 274 61.3
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 3.0e-86 322.4 275 61.8
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 3.9e-86 322.0 273 60.8
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 5.1e-86 321.6 266 62.0
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 5.1e-86 321.6 266 62.0
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 6.7e-86 321.2 274 61.7
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 8.7e-86 320.9 273 61.9
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 1.5e-85 320.1 255 65.1
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 2.5e-85 319.3 268 61.6
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 7.4e-85 317.8 263 63.1
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 1.3e-84 317.0 273 60.1
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 1.6e-84 316.6 294 58.8
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 2.8e-84 315.8 271 58.3
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 3.7e-84 315.5 274 59.9
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 6.3e-84 314.7 271 58.3
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 6.3e-84 314.7 274 62.0
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 8.2e-84 314.3 271 62.7
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 8.2e-84 314.3 208 73.6
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 2.6e-82 309.3 294 57.8
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 5.9e-82 308.1 298 56.7
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 3.2e-80 302.4 304 54.9
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 5.5e-80 301.6 267 59.9
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 7.2e-80 301.2 308 54.2
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 1.0e-78 297.4 208 68.3
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 3.0e-78 295.8 266 60.5
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 3.9e-78 295.4 376 46.0
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 6.7e-78 294.7 265 57.0
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 6.7e-78 294.7 265 57.0
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 7.4e-77 291.2 275 58.2
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 2.4e-75 286.2 277 54.2
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 3.1e-75 285.8 277 53.8
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 6.9e-75 284.6 275 56.0
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 2.6e-74 282.7 266 57.9
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 5.9e-74 281.6 280 55.7
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 1.1e-67 260.8 260 54.6
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 2.2e-65 253.1 248 53.2
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 1.4e-64 250.4 271 50.6
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 6.7e-62 241.5 176 66.5
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 8.2e-60 234.6 170 67.1
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 2.7e-55 219.5 245 51.4
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 6.1e-55 218.4 211 53.1
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 3.8e-49 199.1 141 69.5
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 6.5e-49 198.4 242 48.8
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 1.3e-41 174.1 129 69.8
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 8.6e-41 171.4 134 63.4
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 8.6e-33 144.8 83 80.7
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 1.5e-29 134.0 243 37.0
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 2.8e-23 113.2 154 44.2
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 8.9e-22 108.2 190 36.3
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 2.2e-20 103.6 116 51.7
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 1.0e-17 94.7 201 29.9
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 1.0e-17 94.7 199 34.2
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 1.7e-17 94.0 191 31.9
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 2.3e-17 93.6 79 62.0
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 6.6e-17 92.0 191 30.9
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 3.3e-16 89.7 170 33.5
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 9.5e-16 88.2 162 33.3
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 1.2e-15 87.8 220 29.1
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.2e-15 87.8 162 32.7
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 1.2e-15 87.8 187 31.0
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.6e-15 87.4 162 32.1
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.6e-15 87.4 162 32.1
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 1.6e-15 87.4 160 31.2
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 2.1e-15 87.0 193 29.5
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 3.6e-15 86.3 162 32.1
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 4.7e-15 85.9 172 31.4
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 4.7e-15 85.9 162 32.1
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 4.7e-15 85.9 193 29.0
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 4.7e-15 85.9 165 33.9
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 6.2e-15 85.5 185 31.9
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 8.1e-15 85.1 172 33.1
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 8.1e-15 85.1 184 32.6
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 1.4e-14 84.3 188 30.9
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 1.4e-14 84.3 188 29.3
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.8e-14 84.0 182 31.9
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 1.8e-14 84.0 229 27.5
Eucgr.B03960 Eucalyptus grandis HOM05D006708 ORTHO05D008321 1.8e-14 84.0 187 28.3
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 1.8e-14 84.0 192 34.4
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 1.8e-14 84.0 162 32.1
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 1.8e-14 84.0 185 31.9
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 2.3e-14 83.6 185 31.4
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 3.1e-14 83.2 184 33.2
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 3.1e-14 83.2 172 30.8
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 3.1e-14 83.2 181 30.4
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 6.8e-14 82.0 185 31.4
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 6.8e-14 82.0 186 29.6
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 8.9e-14 81.6 164 31.7
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.2e-13 81.3 191 32.5
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 1.5e-13 80.9 180 28.3
Glyma.13G119200 Glycine max HOM05D006708 ORTHO05D008321 2.0e-13 80.5 162 30.9
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 4.4e-13 79.3 170 30.6
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 5.8e-13 79.0 193 26.9
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 5.8e-13 79.0 170 28.8
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 9.9e-13 78.2 168 31.0
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 1.7e-12 77.4 170 32.4
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 4.6e-10 69.3 174 29.9
MD16G1135500 Malus domestica HOM05D006708 ORTHO05D008321 4.6e-10 69.3 188 28.2
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 2.3e-09 67.0 192 26.6
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 3.0e-09 66.6 167 30.5
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 2.5e-08 63.5 74 41.9
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 4.3e-08 62.8 152 28.9
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 6.8e-06 55.5 123 30.1


User provided reference genes

Program Settings