Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.1e-170 603.2 304 100.0
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.3e-58 229.6 176 70.5
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 9.6e-58 228.0 179 67.6
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.5e-55 220.7 155 72.9
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 9.9e-55 218.0 242 54.5
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.9e-54 216.5 187 63.1
Sc12g0007940 Simmondsia chinensis HOM05D012448 ORTHO05D011165 8.4e-46 188.3 164 65.2
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.3e-34 149.4 226 46.0
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.7e-30 137.5 156 49.4
Sc26g0003240 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.1e-27 125.9 207 40.1
Sc18g0004540 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.7e-25 120.9 133 47.4
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.4e-16 91.3 93 46.2
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.4e-16 90.5 103 45.6
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.6e-15 87.8 106 42.5
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 3.2e-13 80.1 82 45.1
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 4.2e-13 79.7 78 43.6
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 5.5e-13 79.3 76 48.7
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 5.5e-13 79.3 127 34.6
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.1e-12 77.4 80 43.8
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.8e-11 74.3 76 43.4
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 5.2e-11 72.8 82 42.7
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.1e-10 71.6 83 45.8
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.5e-10 71.2 91 39.6
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.5e-10 71.2 73 43.8
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.0e-10 70.9 77 39.0
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.0e-10 70.9 83 42.2
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 2.0e-10 70.9 73 45.2
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.3e-10 70.1 80 38.8
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 9.7e-10 68.6 160 31.2
Sc02g0004440 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.3e-09 68.2 75 41.3
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.3e-09 68.2 80 37.5
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 2.2e-09 67.4 75 45.3
Sc09g0006000 Simmondsia chinensis HOM05D015224 ORTHO05D388293 2.2e-09 67.4 118 32.2
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.2e-09 67.4 92 31.5
Sc12g0007750 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.8e-09 67.0 83 38.6
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 6.3e-09 65.9 75 44.0
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 6.3e-09 65.9 112 38.4
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 1.1e-08 65.1 106 35.8
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 1.4e-08 64.7 116 37.9
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.4e-08 64.7 75 40.0
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 3.1e-08 63.5 75 46.7
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 3.1e-08 63.5 75 46.7
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 4.1e-08 63.2 75 45.3
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 4.1e-08 63.2 106 34.0
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 5.3e-08 62.8 75 42.7
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 9.1e-08 62.0 75 42.7
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 9.1e-08 62.0 75 44.0
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 1.2e-07 61.6 106 35.8
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 1.2e-07 61.6 106 35.8
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.6e-07 61.2 106 34.9
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 1.6e-07 61.2 85 40.0
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 1.6e-07 61.2 124 33.9
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 1.6e-07 61.2 106 34.9
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 2.0e-07 60.8 75 42.7
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 2.0e-07 60.8 75 42.7
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 2.0e-07 60.8 75 45.3
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 2.7e-07 60.5 106 34.9
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 2.7e-07 60.5 75 44.0
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 2.7e-07 60.5 75 44.0
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 2.7e-07 60.5 106 35.8
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 3.5e-07 60.1 106 34.9
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 3.5e-07 60.1 75 45.3
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 3.5e-07 60.1 106 34.9
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.5e-07 60.1 106 34.9
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.5e-07 60.1 106 34.9
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 3.5e-07 60.1 106 34.9
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 3.5e-07 60.1 75 45.3
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 3.5e-07 60.1 112 32.1
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 3.5e-07 60.1 90 40.0
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 4.5e-07 59.7 75 42.7
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 4.5e-07 59.7 75 41.3
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 4.5e-07 59.7 75 41.3
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 4.5e-07 59.7 75 42.7
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 4.5e-07 59.7 106 34.0
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 5.9e-07 59.3 106 35.8
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 5.9e-07 59.3 75 44.0
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 5.9e-07 59.3 75 44.0
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 5.9e-07 59.3 106 34.9
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 5.9e-07 59.3 75 44.0
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 5.9e-07 59.3 75 44.0
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 5.9e-07 59.3 75 42.7
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 7.7e-07 58.9 75 42.7
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 7.7e-07 58.9 75 42.7
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 7.7e-07 58.9 75 42.7
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 7.7e-07 58.9 88 40.9
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 7.7e-07 58.9 75 42.7
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 7.7e-07 58.9 75 41.3
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 1.0e-06 58.5 75 41.3
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.0e-06 58.5 75 42.7
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 1.0e-06 58.5 106 34.0
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 1.0e-06 58.5 75 41.3
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.0e-06 58.5 106 34.0
Sc07g0005070 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.0e-06 58.5 75 37.3
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 1.0e-06 58.5 75 45.3
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 1.0e-06 58.5 75 44.0
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 1.3e-06 58.2 75 41.3
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 1.3e-06 58.2 119 31.9
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 1.3e-06 58.2 119 31.9
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.3e-06 58.2 75 42.7
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 1.3e-06 58.2 88 40.9
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 1.3e-06 58.2 113 34.5
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 1.3e-06 58.2 122 34.4
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 1.3e-06 58.2 75 42.7
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.3e-06 58.2 75 42.7
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 1.3e-06 58.2 106 34.0
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 1.3e-06 58.2 75 42.7
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 1.7e-06 57.8 75 44.0
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.7e-06 57.8 75 41.3
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 1.7e-06 57.8 75 41.3
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 1.7e-06 57.8 106 34.0
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 1.7e-06 57.8 75 41.3
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 1.7e-06 57.8 75 41.3
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 1.7e-06 57.8 106 34.9
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 1.7e-06 57.8 119 35.3
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 1.7e-06 57.8 106 34.0
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 1.7e-06 57.8 75 41.3
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 1.7e-06 57.8 75 41.3
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 1.7e-06 57.8 75 44.0
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 1.7e-06 57.8 75 41.3
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 2.2e-06 57.4 75 44.0
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 2.2e-06 57.4 75 42.7
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 2.2e-06 57.4 111 34.2
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 2.9e-06 57.0 75 42.7
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 2.9e-06 57.0 75 42.7
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 2.9e-06 57.0 106 32.1
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 2.9e-06 57.0 111 34.2
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 3.8e-06 56.6 75 44.0
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 3.8e-06 56.6 75 44.0
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 3.8e-06 56.6 75 44.0
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 3.8e-06 56.6 75 44.0
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 3.8e-06 56.6 75 44.0
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 3.8e-06 56.6 75 41.3
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 3.8e-06 56.6 77 41.6
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 3.8e-06 56.6 106 32.1
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 3.8e-06 56.6 75 42.7
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 5.0e-06 56.2 75 44.0
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 5.0e-06 56.2 75 42.7
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 5.0e-06 56.2 75 42.7
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 5.0e-06 56.2 75 41.3
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 5.0e-06 56.2 75 44.0
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 6.5e-06 55.8 85 37.6
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 6.5e-06 55.8 75 40.0
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 6.5e-06 55.8 75 41.3
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 6.5e-06 55.8 75 41.3
Sc03g0006450 Simmondsia chinensis HOM05D008654 ORTHO05D011165 6.5e-06 55.8 52 46.2
Sc23g0004730 Simmondsia chinensis HOM05D015224 ORTHO05D388619 6.5e-06 55.8 91 40.7
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 6.5e-06 55.8 75 41.3
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 6.5e-06 55.8 75 40.0
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 8.5e-06 55.5 75 40.0
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 8.5e-06 55.5 75 41.3
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 8.5e-06 55.5 75 40.0
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 8.5e-06 55.5 75 40.0
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 8.5e-06 55.5 75 41.3
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 8.5e-06 55.5 75 40.0
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 8.5e-06 55.5 75 40.0
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 8.5e-06 55.5 75 41.3
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 8.5e-06 55.5 75 41.3
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 8.5e-06 55.5 75 40.0


User provided reference genes

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