Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1332.8 649 100.0
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1193.7 647 88.6
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1189.1 649 87.5
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1187.6 649 87.5
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1185.6 649 87.2
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 651 87.1
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 650 87.1
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 648 86.1
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 645 87.3
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 648 85.5
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 645 86.2
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 647 85.9
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 650 87.4
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 647 85.3
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 647 86.2
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 648 85.0
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1167.5 649 86.0
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1167.1 650 85.4
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 649 85.8
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1164.4 648 85.5
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1163.7 648 85.0
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1163.3 648 84.7
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 647 85.8
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 648 84.7
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 648 84.6
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 649 84.6
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 651 86.2
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1161.4 648 85.5
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1161.4 652 84.8
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1161.4 649 85.7
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 645 85.6
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 649 84.7
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1160.2 649 85.7
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 649 84.6
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1159.1 649 85.4
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 651 85.4
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 651 84.6
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 652 84.8
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 652 84.4
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 648 85.3
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 649 84.7
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 649 85.5
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 645 85.4
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 643 86.3
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 649 84.6
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 647 84.1
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1154.4 651 85.3
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1154.4 652 84.4
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1154.4 648 84.6
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 647 84.2
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 647 84.7
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 647 84.4
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 645 85.0
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1150.6 645 85.6
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1149.8 647 85.2
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1149.0 647 84.7
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1147.9 648 84.0
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 647 84.2
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1146.7 647 84.1
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1146.0 646 85.0
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1146.0 643 84.6
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1145.6 647 85.6
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1145.6 643 85.2
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1145.6 652 84.5
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1145.2 645 83.7
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 645 84.8
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 652 85.3
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1143.3 641 86.0
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1139.4 648 84.1
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1138.3 648 84.3
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 646 83.0
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 649 84.4
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1132.9 645 83.4
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1132.5 648 82.6
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1132.5 649 82.4
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1130.5 650 83.1
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1130.5 646 83.1
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1130.5 647 82.8
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1130.5 647 82.8
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1129.0 643 83.2
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1127.9 652 82.2
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1127.5 650 82.3
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1126.7 603 88.4
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1126.3 640 84.2
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1125.5 651 82.3
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1124.8 645 82.3
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1123.6 649 82.1
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1123.6 647 82.5
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1120.5 649 82.9
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1119.4 652 81.7
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1119.4 652 81.7
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1117.4 715 76.5
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1116.7 642 82.9
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1115.9 652 81.6
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1115.1 648 83.0
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1114.8 652 81.6
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1112.1 652 81.1
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1111.3 643 83.2
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1104.7 588 87.9
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1098.6 648 81.6
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1087.0 594 87.2
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1082.4 647 80.5
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 2.8e-309 1064.7 647 80.4
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 3.6e-304 1047.7 675 75.7
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 3.4e-302 1041.2 583 84.6
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 2.4e-300 1035.0 647 77.3
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 2.7e-299 1031.6 541 88.7
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 4.5e-299 1030.8 597 82.4
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 2.3e-298 1028.5 575 84.0
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 3.6e-296 1021.1 633 77.6
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.5e-289 999.2 590 79.8
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.0e-287 991.1 554 83.2
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 8.6e-282 973.4 613 77.7
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 7.9e-251 870.5 475 86.1
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 1.7e-229 799.7 513 73.7
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 2.0e-193 679.9 421 79.1
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 1.0e-189 667.5 573 59.5
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 5.6e-188 661.8 395 80.3
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 3.4e-145 519.6 267 90.6
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 6.7e-125 452.2 578 46.0
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 9.2e-74 282.3 217 64.1
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 8.9e-69 265.8 125 95.2
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.2e-44 185.7 108 83.3
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 2.9e-43 181.0 97 90.7
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.1e-42 179.1 151 59.6
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 4.4e-36 157.1 150 56.7
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 2.4e-21 108.2 53 94.3
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 2.6e-20 104.8 53 92.5
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 8.7e-08 63.2 32 87.5


User provided reference genes

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