Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 1.6e-132 476.1 233 100.0
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 1.6e-44 183.7 224 46.0
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 4.3e-42 175.6 204 47.1
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.4e-40 169.9 215 43.3
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.1e-40 169.1 215 44.2
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 1.4e-27 127.5 173 46.8
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 1.8e-24 117.1 196 39.8
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.9e-22 109.8 152 44.1
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 5.0e-22 109.0 210 36.7
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.9e-21 107.1 200 37.5
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.9e-21 107.1 200 37.5
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.6e-20 104.0 200 37.0
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.4e-19 100.9 186 34.4
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 3.0e-19 99.8 153 39.2
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 3.0e-19 99.8 151 41.1
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 3.9e-19 99.4 218 33.5
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 5.2e-19 99.0 173 37.0
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 8.8e-19 98.2 192 33.3
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.1e-18 97.8 173 37.6
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.1e-18 97.8 221 33.5
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.1e-18 97.8 155 39.4
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 1.5e-18 97.4 144 43.1
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 1.5e-18 97.4 200 35.0
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 2.6e-18 96.7 144 42.4
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 3.3e-18 96.3 142 39.4
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 3.3e-18 96.3 162 41.4
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 4.4e-18 95.9 175 38.3
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 4.4e-18 95.9 175 38.3
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 7.4e-18 95.1 182 40.1
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 7.4e-18 95.1 175 37.1
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 9.7e-18 94.7 161 36.6
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-17 94.0 200 34.5
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.7e-17 94.0 174 36.8
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 2.8e-17 93.2 141 41.8
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 2.8e-17 93.2 189 40.2
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 2.8e-17 93.2 139 39.6
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 2.8e-17 93.2 196 36.7
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 4.8e-17 92.4 150 38.7
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 4.8e-17 92.4 164 34.8
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 6.3e-17 92.0 193 34.2
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 6.3e-17 92.0 193 34.2
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 6.3e-17 92.0 159 38.4
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 8.2e-17 91.7 187 33.7
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 8.2e-17 91.7 145 42.1
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.1e-16 91.3 153 39.9
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.1e-16 91.3 193 33.7
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.1e-16 91.3 142 38.7
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 2.4e-16 90.1 154 35.7
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.1e-16 89.7 254 31.1
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 4.1e-16 89.4 174 33.9
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 4.1e-16 89.4 139 41.7
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 7.0e-16 88.6 165 36.4
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 7.0e-16 88.6 142 38.7
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 7.0e-16 88.6 188 34.0
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.2e-15 87.8 149 38.3
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.6e-15 87.4 143 38.5
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 2.0e-15 87.0 144 37.5
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 2.6e-15 86.7 165 35.8
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 4.5e-15 85.9 144 36.8
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.3e-14 84.3 196 33.2
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.3e-14 84.3 156 33.3
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.9e-14 83.2 200 32.5
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 2.9e-14 83.2 136 38.2
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 3.8e-14 82.8 173 36.4
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.0e-14 82.4 191 33.5
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 5.0e-14 82.4 144 38.2
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 6.5e-14 82.0 161 36.6
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.1e-13 81.3 115 38.3
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.5e-13 80.9 159 35.8
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 2.5e-13 80.1 139 35.3
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 9.4e-13 78.2 193 30.1
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 2.7e-12 76.6 138 37.0
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 3.6e-12 76.3 127 35.4
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 4.7e-12 75.9 201 30.3
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 8.0e-12 75.1 143 36.4
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.0e-11 74.7 177 32.2
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 2.3e-11 73.6 92 45.7
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 8.8e-11 71.6 143 33.6
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.2e-10 71.2 216 30.6
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.2e-10 71.2 88 47.7
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 2.0e-10 70.5 111 40.5
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 4.4e-10 69.3 80 50.0
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 4.4e-10 69.3 151 37.7
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 7.5e-10 68.6 76 51.3
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.2e-09 67.0 151 29.8
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 3.7e-09 66.2 175 29.7
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 6.3e-09 65.5 151 33.8
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.1e-08 64.7 84 44.0
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.4e-08 64.3 62 53.2
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.8e-08 63.9 149 34.2
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.8e-08 63.9 65 50.8
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 2.4e-08 63.5 153 31.4
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 3.1e-08 63.2 62 50.0
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.1e-08 63.2 136 35.3
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.1e-08 63.2 74 45.9
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 4.1e-08 62.8 76 46.1
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 5.3e-08 62.4 56 55.4
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.0e-08 62.0 52 55.8
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 9.1e-08 61.6 227 27.8
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 1.2e-07 61.2 147 31.3
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.6e-07 60.8 109 32.1
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 2.0e-07 60.5 135 31.1
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.7e-07 60.1 68 45.6
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 3.5e-07 59.7 107 43.0
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.5e-07 59.7 64 46.9
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 7.7e-07 58.5 142 30.3
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 7.7e-07 58.5 138 30.4
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 1.0e-06 58.2 136 32.4
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 1.0e-06 58.2 197 30.5
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 2.9e-06 56.6 95 40.0
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 2.9e-06 56.6 169 27.8
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 3.8e-06 56.2 47 53.2
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 5.0e-06 55.8 136 31.6
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 5.0e-06 55.8 120 36.7
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 5.0e-06 55.8 146 31.5
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 6.5e-06 55.5 163 30.7
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 8.5e-06 55.1 195 28.2


User provided reference genes

Program Settings