Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 0.0e+00 1353.6 722 100.0
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 0.0e+00 1102.0 725 79.6
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 0.0e+00 1078.2 729 79.0
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 0.0e+00 1075.1 730 79.2
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 2.5e-311 1071.6 730 79.0
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 7.4e-311 1070.1 731 80.4
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 3.8e-310 1067.8 721 80.3
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 1.4e-309 1065.8 730 79.6
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 4.1e-309 1064.3 783 73.8
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 6.0e-308 1060.4 727 78.1
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 9.5e-306 1053.1 727 78.7
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 6.2e-305 1050.4 732 77.2
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.5e-303 1045.8 730 77.9
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 1.3e-302 1042.7 731 76.3
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 2.2e-302 1042.0 717 78.7
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 6.4e-302 1040.4 767 74.6
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 3.5e-300 1034.6 733 77.5
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 6.0e-300 1033.9 728 77.3
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 7.8e-300 1033.5 725 77.2
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.3e-299 1031.9 722 77.4
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 6.6e-299 1030.4 722 77.3
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 8.6e-299 1030.0 726 76.9
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 1.1e-298 1029.6 726 75.2
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 4.3e-298 1027.7 725 76.8
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 2.8e-297 1025.0 725 75.2
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 2.8e-297 1025.0 724 75.8
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 2.8e-297 1025.0 732 75.8
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 1.4e-296 1022.7 743 76.2
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 8.9e-296 1020.0 724 74.7
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 5.8e-295 1017.3 748 75.8
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 1.3e-294 1016.1 749 74.1
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 6.4e-294 1013.8 724 75.1
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 2.4e-293 1011.9 681 80.5
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 3.2e-293 1011.5 722 74.5
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 1.2e-292 1009.6 727 75.2
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 2.7e-292 1008.4 723 74.6
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 1.0e-291 1006.5 726 75.3
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 1.1e-290 1003.0 724 74.4
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 5.6e-290 1000.7 725 73.1
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 7.3e-290 1000.3 714 74.9
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 1.6e-289 999.2 735 73.9
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 3.6e-289 998.0 733 74.5
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 8.1e-289 996.9 732 74.6
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 6.9e-288 993.8 730 74.7
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 9.0e-288 993.4 717 76.7
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 4.4e-287 991.1 728 73.5
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 5.8e-287 990.7 786 71.8
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 7.6e-287 990.3 731 73.9
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 9.9e-287 989.9 722 73.5
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 9.9e-287 989.9 732 74.6
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 1.3e-286 989.6 723 73.9
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.7e-286 989.2 723 73.0
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 2.2e-286 988.8 721 74.2
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.2e-286 988.8 724 75.3
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 2.9e-286 988.4 724 75.4
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 1.9e-285 985.7 711 73.7
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 3.2e-285 984.9 728 74.5
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 3.2e-285 984.9 724 74.3
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 4.6e-284 981.1 709 75.7
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 1.7e-283 979.2 605 81.8
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 6.6e-283 977.2 715 73.8
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 6.2e-281 970.7 723 73.0
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 1.4e-280 969.5 797 68.9
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.4e-280 969.5 721 73.5
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 9.0e-280 966.8 723 71.6
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.0e-279 965.7 731 74.1
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 4.5e-279 964.5 661 77.3
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 3.8e-278 961.4 695 73.5
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 1.1e-277 959.9 732 72.0
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 2.4e-277 958.7 730 71.9
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 2.4e-277 958.7 571 83.4
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 4.2e-277 958.0 715 73.6
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 6.0e-276 954.1 715 70.8
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 2.1e-273 945.7 652 75.0
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 3.7e-273 944.9 654 74.8
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 2.4e-272 942.2 724 70.3
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 4.5e-271 937.9 738 73.4
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 5.8e-271 937.6 684 73.2
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 7.6e-271 937.2 655 78.0
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 9.9e-271 936.8 628 79.1
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 1.4e-269 932.9 663 74.8
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.7e-268 928.7 726 68.9
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 6.0e-268 927.5 725 68.3
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 7.9e-268 927.2 499 88.8
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 4.3e-266 921.4 729 68.0
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.3e-265 919.8 495 89.7
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 9.0e-264 913.7 724 69.9
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.1e-261 906.7 734 70.0
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 5.5e-261 904.4 728 69.0
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.8e-256 889.4 735 69.7
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 7.6e-255 884.0 799 62.8
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 1.4e-248 863.2 721 67.4
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 5.9e-247 857.8 470 87.0
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 9.1e-240 833.9 628 74.4
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 7.7e-239 830.9 668 68.1
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 5.3e-232 808.1 733 64.3
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.0e-219 767.3 749 58.5
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 4.4e-218 761.9 614 64.0
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 4.5e-215 751.9 687 58.7
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.2e-207 727.2 496 70.2
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.4e-200 701.8 399 84.0
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 7.8e-191 671.4 687 59.4
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.8e-187 660.2 336 92.0
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 5.2e-179 632.1 541 58.0
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 2.9e-177 626.3 466 64.4
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.7e-174 617.1 464 64.0
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 3.6e-172 609.4 553 66.7
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 4.3e-165 585.9 360 78.9
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 6.2e-164 582.0 549 65.0
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 2.0e-130 470.7 503 50.1
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 3.4e-130 469.9 492 56.3
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.5e-122 443.0 255 80.4
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.3e-121 441.4 556 44.1
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 5.4e-107 392.9 707 38.3
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.2e-103 381.7 214 86.0
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 6.8e-102 375.9 513 38.6
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 2.2e-100 370.9 384 62.5
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 6.8e-94 349.4 179 91.6
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 6.6e-89 332.8 263 66.5
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 7.8e-74 282.7 157 82.2
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 3.9e-65 253.8 366 51.9
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.1e-58 231.5 172 66.3
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 7.8e-58 229.6 316 50.6
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.4e-43 181.4 95 89.5
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.0e-41 176.0 256 47.7
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 3.9e-41 174.1 244 48.8
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.2e-35 154.5 297 44.8
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 6.3e-31 140.2 96 76.0
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 8.7e-25 119.8 231 50.2
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-24 119.0 76 80.3
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 6.5e-20 103.6 119 52.1
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.1e-14 86.3 202 45.5
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.8e-12 77.8 219 37.4
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.0e-09 68.2 171 37.4
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 1.1e-08 66.2 100 58.0
arahy.Tifrunner.gnm1.ann1.9SD0MH Arachis hypogaea HOM05D005363 ORTHO05D015967 3.7e-07 61.2 51 58.8
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.7e-07 61.2 173 34.7
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.1e-06 58.2 90 45.6


User provided reference genes

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