Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 9.0e-204 713.4 363 100.0
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 9.1e-148 527.3 365 73.4
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.0e-147 526.2 365 74.8
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.3e-146 523.5 390 70.5
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 2.3e-146 522.7 365 73.2
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 3.8e-146 521.9 381 71.7
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 2.5e-145 519.2 365 72.6
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 8.0e-144 514.2 365 72.1
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 8.0e-144 514.2 364 72.5
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 8.9e-143 510.8 365 72.3
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 4.4e-142 508.4 358 72.3
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 5.7e-142 508.1 365 72.1
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 9.8e-142 507.3 364 72.3
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.9e-141 505.0 366 72.1
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 4.9e-141 505.0 362 71.8
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 8.3e-141 504.2 365 71.2
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.8e-140 503.1 370 70.3
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 1.8e-140 503.1 365 69.3
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 3.1e-140 502.3 364 69.8
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.1e-140 501.9 365 70.1
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 7.0e-140 501.1 364 71.2
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 9.2e-140 500.7 364 70.3
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 9.2e-140 500.7 364 72.0
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 1.6e-139 500.0 364 70.6
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.7e-139 499.2 365 71.5
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 2.7e-139 499.2 364 72.3
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.5e-139 498.4 364 70.6
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 7.8e-139 497.7 364 70.3
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.0e-138 497.3 364 69.2
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.7e-138 496.5 364 69.2
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 2.9e-138 495.7 364 70.1
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 2.9e-138 495.7 364 70.3
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 5.0e-138 495.0 364 70.3
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 6.6e-138 494.6 364 70.3
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 1.1e-137 493.8 364 70.3
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.5e-137 493.4 364 69.8
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.5e-137 493.4 366 68.9
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.5e-137 493.4 364 69.5
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 2.5e-137 492.7 365 70.4
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 4.3e-137 491.9 364 70.1
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 5.6e-137 491.5 368 69.3
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 7.3e-137 491.1 365 70.7
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.5e-137 490.7 364 70.1
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.5e-137 490.7 364 70.1
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.2e-136 490.3 368 68.5
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 4.7e-136 488.4 375 68.8
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.1e-136 488.0 338 72.2
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 6.1e-136 488.0 366 69.4
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 8.0e-136 487.6 365 69.0
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.4e-135 486.9 365 69.3
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 2.3e-135 486.1 365 68.5
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 6.8e-135 484.6 366 69.4
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.2e-134 483.8 367 70.3
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 2.0e-134 483.0 386 65.3
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 2.2e-133 479.6 365 66.8
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 8.3e-133 477.6 364 69.2
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.4e-132 476.9 365 68.2
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.4e-132 476.9 360 68.1
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 1.8e-132 476.5 365 67.4
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 4.1e-132 475.3 365 67.1
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 7.0e-132 474.6 365 67.1
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 1.2e-131 473.8 365 67.9
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.7e-131 472.6 360 67.5
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 3.9e-130 468.8 366 66.7
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.5e-129 466.8 365 66.0
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.5e-129 466.1 365 66.0
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 2.8e-128 462.6 365 66.3
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 3.6e-128 462.2 370 65.9
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 1.7e-125 453.4 357 67.2
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 2.2e-125 453.0 366 66.7
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.4e-125 451.4 365 66.8
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.1e-124 450.7 365 66.6
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 1.1e-124 450.7 365 64.4
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.4e-124 450.3 361 66.5
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.2e-124 449.1 363 65.6
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 2.1e-123 446.4 307 72.3
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.9e-121 439.9 360 65.6
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 7.3e-121 438.0 367 62.4
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.2e-120 437.2 364 64.6
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 2.8e-120 436.0 319 69.9
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.2e-120 434.9 375 63.5
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 5.2e-119 431.8 364 63.2
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.5e-118 430.3 364 63.7
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 2.6e-118 429.5 364 62.9
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 9.9e-118 427.6 365 63.6
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 2.9e-117 426.0 365 63.8
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 4.9e-117 425.2 364 61.8
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 8.3e-117 424.5 364 63.2
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 1.4e-116 423.7 360 63.6
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 3.2e-116 422.5 365 63.0
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 7.1e-116 421.4 356 63.5
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 9.2e-116 421.0 363 63.1
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 9.2e-116 421.0 378 61.4
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 7.8e-115 417.9 378 58.5
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 2.3e-114 416.4 390 59.5
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 3.0e-114 416.0 370 61.6
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 3.9e-114 415.6 364 61.3
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.6e-112 410.2 333 64.6
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 3.0e-106 389.4 278 72.3
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 6.6e-106 388.3 360 57.8
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 1.5e-105 387.1 363 58.4
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.6e-102 376.3 340 58.2
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 7.6e-102 374.8 303 64.4
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 6.0e-99 365.2 387 51.2
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.6e-96 355.9 378 55.3
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 8.4e-93 344.7 308 58.4
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.4e-87 327.4 245 69.4
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.9e-84 317.0 354 48.6
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 6.0e-83 312.0 387 46.0
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.6e-75 287.3 399 42.4
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 2.2e-72 276.9 364 48.9
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.7e-69 267.3 307 51.5
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 6.5e-69 265.4 215 63.7
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 7.2e-68 261.9 278 54.0
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 8.2e-64 248.4 173 71.1
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 7.7e-62 241.9 167 70.7
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 2.3e-58 230.3 208 58.2
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 9.7e-57 224.9 199 61.3
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.1e-55 221.5 197 59.4
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 5.3e-55 219.2 168 66.7
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 2.6e-54 216.9 161 67.7
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 8.8e-50 201.8 122 82.8
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.2e-48 197.2 122 81.1
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 5.9e-46 189.1 249 43.8
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 9.4e-44 181.8 149 63.8
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 5.7e-41 172.6 195 50.3
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 9.7e-41 171.8 308 39.0
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 1.1e-39 168.3 165 56.4
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.1e-39 166.4 122 73.0
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 7.0e-39 165.6 145 62.1
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 9.4e-36 155.2 141 60.3
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 6.3e-32 142.5 182 42.9
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 1.2e-30 138.3 145 53.1
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 2.7e-30 137.1 114 61.4
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 8.9e-26 122.1 72 80.6
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.0e-25 120.9 82 72.0
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.1e-23 115.2 71 80.3
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.3e-20 103.2 77 66.2
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 1.4e-18 98.2 400 24.8
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-13 81.6 136 36.0
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 4.7e-11 73.2 392 22.7


User provided reference genes

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