Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0004120 Simmondsia chinensis HOM05D004026 ORTHO05D004712 3.6e-32 141.0 70 100.0
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 1.4e-25 119.0 61 98.4
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 1.9e-25 118.6 61 96.7
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 1.9e-25 118.6 61 96.7
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 1.9e-25 118.6 61 96.7
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 1.9e-25 118.6 61 96.7
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 1.9e-25 118.6 61 96.7
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 1.9e-25 118.6 61 96.7
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.5e-25 118.2 61 95.1
Nitab4.5_0010284g0010 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.5e-25 118.2 60 98.3
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 3.2e-25 117.9 61 96.7
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 3.2e-25 117.9 61 96.7
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 3.2e-25 117.9 61 96.7
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 3.2e-25 117.9 61 96.7
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 3.2e-25 117.9 61 96.7
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 3.2e-25 117.9 61 96.7
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 3.2e-25 117.9 61 96.7
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 3.2e-25 117.9 61 96.7
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 3.2e-25 117.9 61 96.7
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 4.2e-25 117.5 59 100.0
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 96.7
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 96.7
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 96.7
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 96.7
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 96.7
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 96.7
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 4.2e-25 117.5 60 96.7
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 4.2e-25 117.5 61 95.1
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 5.5e-25 117.1 61 96.7
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 5.5e-25 117.1 61 96.7
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 5.5e-25 117.1 61 96.7
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 5.5e-25 117.1 59 98.3
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 5.5e-25 117.1 61 93.4
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 7.2e-25 116.7 61 95.1
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 7.2e-25 116.7 61 95.1
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 9.4e-25 116.3 61 93.4
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 9.4e-25 116.3 61 95.1
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 9.4e-25 116.3 61 93.4
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 9.4e-25 116.3 61 95.1
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 9.4e-25 116.3 61 93.4
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 1.2e-24 115.9 61 95.1
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.2e-24 115.9 61 96.7
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 1.2e-24 115.9 61 95.1
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 1.2e-24 115.9 61 95.1
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 1.2e-24 115.9 61 95.1
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 1.6e-24 115.5 61 91.8
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 1.6e-24 115.5 61 93.4
Nitab4.5_0002064g0050 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.6e-24 115.5 58 96.6
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 2.1e-24 115.2 61 93.4
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 2.7e-24 114.8 61 95.1
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.7e-24 114.8 61 91.8
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 2.7e-24 114.8 61 93.4
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 3.6e-24 114.4 61 91.8
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 4.7e-24 114.0 61 93.4
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 4.7e-24 114.0 61 90.2
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 6.1e-24 113.6 61 88.5
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 6.1e-24 113.6 59 91.5
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 6.1e-24 113.6 61 88.5
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 6.1e-24 113.6 61 93.4
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 6.1e-24 113.6 61 91.8
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 6.1e-24 113.6 61 90.2
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 6.1e-24 113.6 61 91.8
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 6.1e-24 113.6 61 91.8
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 7.9e-24 113.2 61 91.8
SHI20484 Sapria himalayana HOM05D004026 ORTHO05D004712 7.9e-24 113.2 64 84.4
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 1.4e-23 112.5 61 86.9
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 1.4e-23 112.5 61 91.8
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.8e-23 112.1 59 94.9
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.8e-23 112.1 59 94.9
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 3.0e-23 111.3 59 89.8
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 3.0e-23 111.3 55 100.0
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 3.9e-23 110.9 61 86.9
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 3.9e-23 110.9 61 86.9
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 5.1e-23 110.5 61 90.2
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 5.1e-23 110.5 61 86.9
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 6.7e-23 110.2 60 88.3
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 6.7e-23 110.2 60 88.3
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 6.7e-23 110.2 61 86.9
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 6.7e-23 110.2 61 86.9
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 6.7e-23 110.2 61 86.9
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 6.7e-23 110.2 59 88.1
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 6.7e-23 110.2 61 86.9
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 2.0e-22 108.6 61 85.2
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 2.0e-22 108.6 61 85.2
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 2.0e-22 108.6 61 85.2
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 2.0e-22 108.6 61 85.2
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 2.0e-22 108.6 61 85.2
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 2.0e-22 108.6 61 85.2
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 2.0e-22 108.6 61 85.2
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 2.6e-22 108.2 78 76.9
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 2.6e-22 108.2 61 85.2
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 3.3e-22 107.8 60 86.7
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 5.7e-22 107.1 59 86.4
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 7.4e-22 106.7 61 83.6
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 9.7e-22 106.3 58 86.2
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 9.7e-22 106.3 58 86.2
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 9.7e-22 106.3 58 86.2
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 9.7e-22 106.3 58 86.2
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 9.7e-22 106.3 58 86.2
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 9.7e-22 106.3 58 86.2
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 1.3e-21 105.9 58 86.2
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 2.2e-21 105.1 61 82.0
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 2.2e-21 105.1 61 82.0
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 2.2e-21 105.1 61 82.0
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 2.2e-21 105.1 61 82.0
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 2.2e-21 105.1 61 82.0
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 3.7e-21 104.4 60 85.0
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 4.8e-21 104.0 58 84.5
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 4.8e-21 104.0 60 85.0
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 8.2e-21 103.2 59 79.7
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 1.4e-20 102.4 59 83.1
Oeu011940.1 Olea europaea HOM05D004026 ORTHO05D004712 6.9e-20 100.1 52 98.1
CiPaw.15G016800 Carya illinoinensis HOM05D004026 ORTHO05D004712 7.7e-19 96.7 52 94.2
RcHm_v2.0_Chr6g0275581 Rosa chinensis HOM05D004026 ORTHO05D004712 7.7e-19 96.7 52 94.2
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 2.5e-17 91.7 61 70.5
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 2.4e-12 75.1 55 60.0
GSVIVG01034520001 Vitis vinifera HOM05D004026 ORTHO05D004712 4.5e-11 70.9 40 85.0
CiPaw.16G013200 Carya illinoinensis HOM05D004026 ORTHO05D004712 5.0e-10 67.4 34 97.1
Ca_28109_v3 Cicer arietinum L. HOM05D004026 ORTHO05D004712 5.0e-10 67.4 34 97.1
Rhsim10G0141800 Rhododendron simsii HOM05D004026 ORTHO05D004712 5.0e-10 67.4 34 97.1
TWI60G1706 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 5.0e-10 67.4 34 97.1
Nitab4.5_0000004g0160 Nicotiana tabacum HOM05D004026 ORTHO05D004712 6.5e-10 67.0 34 94.1
MD10G1024600 Malus domestica HOM05D004026 ORTHO05D004712 1.5e-09 65.9 34 94.1
Prupe.3G148200 Prunus persica HOM05D004026 ORTHO05D004712 1.5e-09 65.9 34 94.1
vmacro12827 Vaccinium macrocarpon HOM05D004026 ORTHO05D004712 1.9e-09 65.5 32 96.9
AUR62013577 Chenopodium quinoa HOM05D004026 ORTHO05D004712 5.5e-09 63.9 34 88.2
C05p19920 Brassica napus HOM05D004026 ORTHO05D004712 7.2e-09 63.5 33 87.9
SalBow4G0880 Salvia bowleyana HOM05D004026 ORTHO05D004712 1.2e-08 62.8 59 61.0
MSTRG.22373 Avicennia marina HOM05D004026 ORTHO05D004712 6.7e-07 57.0 34 73.5
Cfa023910 Carpinus fangiana HOM05D004026 ORTHO05D004712 2.0e-06 55.5 58 44.8


User provided reference genes

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