Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.1e-192 676.8 423 100.0
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 9.0e-163 577.4 323 86.1
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.4e-160 570.1 318 81.1
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 3.5e-159 565.5 319 82.1
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 4.6e-159 565.1 319 81.8
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.3e-158 563.5 319 81.5
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 2.3e-158 562.8 322 79.5
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.5e-157 560.1 321 82.6
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 2.5e-157 559.3 322 81.7
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 7.4e-157 557.8 319 81.8
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.3e-156 557.0 319 81.5
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 1.6e-156 556.6 322 81.1
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.6e-156 556.6 339 79.4
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.6e-156 556.6 323 82.0
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 4.8e-156 555.1 317 79.8
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.1e-155 553.9 325 79.7
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.8e-155 553.1 319 81.8
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.4e-155 552.7 319 79.9
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 2.4e-155 552.7 328 79.9
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 6.9e-155 551.2 320 78.8
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.0e-154 549.7 319 80.9
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 7.6e-154 547.7 321 79.1
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 7.6e-154 547.7 321 80.7
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 1.3e-153 547.0 323 79.9
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.3e-153 547.0 323 79.9
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.3e-153 547.0 319 79.0
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.3e-153 547.0 322 78.3
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 3.8e-153 545.4 322 79.2
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 3.8e-153 545.4 322 79.8
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.4e-152 543.5 318 82.4
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 3.2e-152 542.3 320 79.7
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 5.5e-152 541.6 323 77.7
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 7.1e-152 541.2 319 79.0
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.6e-151 540.0 327 80.7
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.1e-151 539.7 321 77.9
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 3.5e-151 538.9 322 78.9
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 2.3e-150 536.2 314 80.3
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 3.0e-150 535.8 326 77.6
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.9e-150 535.4 328 80.5
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 6.7e-150 534.6 328 80.2
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 6.7e-150 534.6 328 80.2
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.5e-149 533.5 321 79.4
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 5.6e-149 531.6 322 78.6
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 7.4e-149 531.2 359 73.8
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 7.4e-149 531.2 338 75.4
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 7.4e-149 531.2 328 79.9
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.3e-148 530.4 327 79.8
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.6e-148 530.0 327 76.8
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 2.4e-147 526.2 324 77.5
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 4.0e-147 525.4 329 76.0
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 6.9e-147 524.6 320 76.2
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 9.0e-147 524.2 326 78.2
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.5e-146 523.5 319 79.9
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.0e-146 523.1 327 75.2
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.0e-146 523.1 327 75.2
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 2.6e-146 522.7 299 79.6
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 3.4e-146 522.3 319 76.8
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 1.7e-145 520.0 357 69.5
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.7e-145 520.0 321 76.6
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 6.5e-145 518.1 323 75.9
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 8.4e-145 517.7 329 75.7
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.9e-144 516.5 329 73.9
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.2e-144 515.8 306 78.8
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 4.2e-144 515.4 318 77.0
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 1.6e-143 513.5 325 76.0
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 2.2e-140 503.1 323 75.2
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.1e-139 498.8 323 74.9
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 5.3e-139 498.4 324 75.6
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 9.0e-139 497.7 319 74.0
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 7.6e-138 494.6 328 72.9
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 1.0e-137 494.2 326 73.9
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.7e-137 493.4 326 73.9
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 2.9e-137 492.7 332 73.2
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 7.2e-136 488.0 326 73.6
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.8e-134 483.4 328 73.5
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 6.7e-134 481.5 321 71.3
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.9e-133 479.9 323 71.2
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 3.1e-131 472.6 324 69.4
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 1.5e-130 470.3 318 71.1
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 5.9e-130 468.4 322 72.4
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.0e-129 467.6 323 69.0
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 2.9e-129 466.1 327 69.1
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 3.8e-129 465.7 311 72.3
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 6.7e-126 454.9 323 67.5
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 2.0e-125 453.4 322 66.8
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 2.6e-125 453.0 324 67.0
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 5.7e-125 451.8 323 69.0
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.4e-125 451.4 251 84.5
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.3e-124 450.7 327 67.3
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 1.7e-124 450.3 325 66.5
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 2.8e-124 449.5 323 67.5
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 2.8e-124 449.5 322 67.4
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 6.3e-124 448.4 326 69.0
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 1.1e-123 447.6 320 67.5
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 1.4e-123 447.2 298 72.8
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 3.1e-123 446.0 319 70.5
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 4.1e-123 445.7 282 77.7
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 7.0e-123 444.9 324 65.4
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 9.1e-123 444.5 336 64.0
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 5.9e-122 441.8 336 63.7
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.9e-121 439.5 320 67.5
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 8.5e-121 438.0 321 64.8
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.9e-120 436.8 331 67.1
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 5.2e-118 428.7 331 64.0
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.1e-117 427.6 289 72.3
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 7.4e-117 424.9 325 65.2
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 2.4e-115 419.9 325 64.6
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 2.2e-113 413.3 323 64.7
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.1e-112 411.0 291 67.7
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.4e-110 404.1 318 63.2
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 4.4e-109 399.1 320 62.8
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.4e-102 377.5 210 83.8
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.1e-99 367.9 217 79.3
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 4.4e-85 319.3 230 70.4
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.0e-82 310.5 239 65.3
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 4.6e-82 309.3 192 76.6
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.9e-80 303.9 304 51.0
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 4.7e-79 299.3 352 47.2
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 1.7e-73 280.8 266 53.8
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 1.7e-68 264.2 257 56.0
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 1.4e-67 261.2 226 54.0
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 4.3e-64 249.6 214 59.8
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 1.2e-61 241.5 152 75.0
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 9.9e-61 238.4 360 41.4
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 1.5e-48 198.0 121 72.7
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 5.8e-45 186.0 167 62.3
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 1.8e-38 164.5 93 78.5
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 4.8e-31 139.8 92 72.8
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 1.1e-30 138.7 107 67.3
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 6.1e-26 122.9 76 76.3
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 3.0e-25 120.6 230 35.2
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 4.5e-21 106.7 80 66.2
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 8.8e-17 92.4 236 30.9
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 9.7e-16 89.0 52 76.9
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 9.4e-11 72.4 83 49.4
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 3.3e-08 63.9 172 27.3
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 9.1e-06 55.8 47 55.3


User provided reference genes

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