Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 0.0e+00 1190.3 612 100.0
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 8.3e-226 787.3 656 65.2
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 9.5e-222 773.9 612 65.7
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 3.3e-214 748.8 708 59.5
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 4.0e-204 715.3 699 56.9
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 7.8e-200 701.0 665 57.1
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 2.2e-194 682.9 639 58.7
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.7e-191 673.3 668 56.7
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.6e-191 671.4 671 55.9
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.1e-190 670.6 650 57.1
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.9e-190 669.8 668 54.6
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 5.6e-190 668.3 671 56.0
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 2.6e-187 659.4 671 56.0
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 4.1e-185 652.1 671 54.5
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 2.3e-183 646.4 668 53.0
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 4.0e-180 635.6 672 54.3
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 5.8e-179 631.7 681 52.9
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 7.6e-179 631.3 718 49.2
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 2.4e-177 626.3 656 53.7
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 2.4e-177 626.3 703 51.1
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 2.1e-176 623.2 764 47.9
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 4.6e-176 622.1 624 55.1
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 8.7e-175 617.8 712 50.3
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 7.3e-174 614.8 731 48.3
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 3.6e-173 612.5 717 49.9
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 4.8e-173 612.1 713 49.6
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 6.2e-173 611.7 674 52.2
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 6.2e-173 611.7 713 49.5
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 6.4e-170 601.7 636 53.1
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 8.4e-170 601.3 670 52.1
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 1.9e-169 600.1 673 51.0
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 7.1e-169 598.2 695 49.8
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 9.3e-169 597.8 718 49.0
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 9.3e-169 597.8 696 49.4
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 2.1e-168 596.7 725 48.8
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 4.6e-168 595.5 718 49.3
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 7.9e-168 594.7 735 48.6
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 7.9e-168 594.7 711 48.4
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 3.0e-167 592.8 712 47.9
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 3.9e-167 592.4 644 53.1
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 2.5e-166 589.7 722 48.3
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 7.4e-166 588.2 653 52.8
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 9.6e-166 587.8 715 49.1
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 9.6e-166 587.8 715 48.4
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 2.8e-165 586.3 671 50.8
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 6.2e-165 585.1 709 48.7
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 6.2e-165 585.1 642 52.5
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.8e-162 575.9 752 46.8
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 1.1e-161 574.3 618 52.8
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 1.4e-161 573.9 713 46.8
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 5.5e-161 572.0 667 48.9
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 5.5e-161 572.0 706 49.2
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.6e-160 570.5 695 48.3
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.6e-160 570.5 760 47.2
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 2.7e-160 569.7 716 47.1
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 2.7e-160 569.7 648 49.5
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 2.7e-160 569.7 638 52.0
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 6.0e-160 568.5 530 57.9
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 8.7e-159 564.7 667 49.3
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 8.7e-159 564.7 625 52.0
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 9.6e-158 561.2 675 49.3
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.6e-157 560.5 796 44.0
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.1e-157 560.1 667 48.3
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 6.2e-157 558.5 647 51.2
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 2.4e-156 556.6 668 48.4
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 4.5e-155 552.4 726 46.6
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 1.7e-154 550.4 734 45.8
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 8.4e-154 548.1 709 46.8
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 1.1e-153 547.7 672 47.2
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 5.5e-153 545.4 724 44.6
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 2.1e-152 543.5 571 55.7
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 4.6e-152 542.3 619 50.2
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 5.1e-151 538.9 709 46.8
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 2.5e-145 520.0 701 45.9
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 2.5e-145 520.0 703 45.1
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 5.5e-145 518.8 701 45.8
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.9e-142 510.4 707 44.6
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.2e-141 506.9 701 45.2
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 6.3e-141 505.4 688 45.1
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 3.1e-140 503.1 657 46.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-139 500.7 642 47.7
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 2.9e-138 496.5 741 41.4
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 7.2e-137 491.9 738 41.9
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 7.2e-137 491.9 737 41.2
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.2e-136 491.1 735 42.9
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 3.6e-136 489.6 719 43.0
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.0e-135 488.0 608 47.0
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 4.4e-134 482.6 766 41.4
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 9.1e-132 474.9 603 47.9
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 6.5e-130 468.8 852 38.6
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.2e-128 464.5 762 41.2
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.4e-127 461.1 664 44.4
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 2.3e-127 460.3 608 45.9
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.0e-123 447.2 678 43.1
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.0e-119 434.9 679 43.2
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 7.7e-115 418.7 830 35.1
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 5.0e-114 416.0 824 35.3
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 8.8e-111 405.2 851 34.8
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 2.6e-110 403.7 847 34.4
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 8.6e-106 388.7 496 47.2
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.0e-103 381.7 465 48.4
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 4.9e-101 372.9 722 36.7
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 2.0e-99 367.5 819 34.1
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 1.5e-97 361.3 600 39.8
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 3.6e-88 330.1 636 37.4
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 8.9e-87 325.5 620 36.8
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 9.2e-84 315.5 649 36.4
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 6.4e-77 292.7 306 54.6
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 3.9e-74 283.5 710 30.7
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.5e-73 280.8 621 36.2
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.2e-72 278.5 323 48.9
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.4e-68 265.0 625 33.0
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.5e-67 260.4 593 36.3
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 6.6e-66 256.1 197 65.5
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 2.8e-64 250.8 618 31.1
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.0e-63 246.9 277 50.2
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 6.9e-63 246.1 885 27.2
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 1.1e-57 228.8 399 38.8
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 7.9e-51 206.1 636 28.9
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 3.2e-44 184.1 177 53.1
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 3.2e-44 184.1 177 53.1
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.1e-41 175.6 125 70.4
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 3.3e-41 174.1 423 31.2
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.4e-36 158.7 201 43.8
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 7.9e-35 152.9 133 64.7
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.7e-24 118.6 82 70.7
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-22 112.1 103 55.3
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 4.7e-19 100.5 90 58.9
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 3.9e-18 97.4 182 35.7
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 5.1e-18 97.1 135 40.0
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 2.8e-16 91.3 101 47.5
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.7e-08 65.5 154 37.0
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 2.4e-07 61.6 51 56.9


User provided reference genes

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