Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.0e-126 454.1 223 100.0
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 9.0e-122 440.3 218 99.5
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.3e-112 409.8 223 88.3
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 2.7e-110 402.1 223 85.2
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 6.7e-109 397.5 221 86.0
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 5.9e-105 384.4 223 82.1
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.3e-101 372.5 222 79.7
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.6e-100 369.0 224 79.5
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.4e-100 367.5 224 79.0
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.2e-99 365.9 224 78.6
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 5.3e-98 361.3 223 76.7
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 2.6e-97 359.0 219 76.7
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.6e-97 359.0 219 74.9
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.2e-95 351.7 225 76.4
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 5.5e-95 351.3 218 76.1
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 7.2e-95 350.9 223 73.5
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 3.6e-94 348.6 223 74.9
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 4.7e-94 348.2 223 71.3
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 4.7e-94 348.2 223 74.0
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 6.1e-94 347.8 223 72.6
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 6.1e-94 347.8 217 75.1
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 8.0e-94 347.4 223 73.5
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.8e-93 346.3 219 74.9
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.3e-93 345.9 222 71.6
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.5e-92 343.2 223 71.3
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.3e-92 342.0 223 70.9
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 4.4e-92 341.7 224 72.3
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.3e-91 340.1 223 71.7
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 4.8e-91 338.2 224 71.4
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 6.3e-91 337.8 225 69.3
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.1e-90 337.0 223 69.5
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.1e-90 337.0 224 73.2
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.4e-90 336.7 223 68.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.4e-90 336.7 213 71.4
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.1e-90 335.5 213 72.3
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.1e-90 335.5 213 72.3
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 9.1e-90 334.0 265 61.9
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.7e-89 332.4 223 68.2
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 4.5e-89 331.6 223 68.2
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 4.5e-89 331.6 224 68.3
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 5.9e-89 331.3 212 70.8
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 7.7e-89 330.9 223 67.7
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 7.7e-89 330.9 213 70.9
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.9e-88 328.9 238 67.2
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.9e-88 328.9 223 69.1
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.8e-88 328.6 260 62.3
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.8e-88 328.6 260 62.3
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 5.0e-88 328.2 218 68.8
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 8.5e-88 327.4 215 74.9
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.5e-87 325.9 223 65.0
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 2.5e-87 325.9 219 71.2
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-87 325.5 221 68.3
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.6e-86 323.2 223 64.6
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 6.1e-86 321.2 218 65.6
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 6.1e-86 321.2 223 68.6
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.8e-85 319.7 223 70.0
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 5.2e-85 318.2 251 62.5
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.2e-84 317.0 218 67.4
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.2e-84 317.0 214 65.0
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 2.6e-84 315.8 218 66.1
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 9.8e-84 313.9 218 65.6
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 9.8e-84 313.9 243 63.4
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.3e-83 313.5 215 67.0
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.7e-83 313.2 215 67.9
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 8.3e-83 310.8 218 65.6
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 8.3e-83 310.8 252 60.7
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.8e-82 309.7 218 65.1
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 4.1e-82 308.5 217 65.4
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 4.1e-82 308.5 217 65.0
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 4.1e-82 308.5 217 65.0
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 3.5e-81 305.4 218 68.8
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.3e-80 303.5 218 63.8
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 2.9e-80 302.4 213 63.4
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 6.5e-80 301.2 215 64.2
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 5.5e-79 298.1 212 65.1
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.5e-79 298.1 215 65.1
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 7.2e-79 297.7 218 62.4
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 9.4e-79 297.4 218 60.6
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-78 295.8 216 63.9
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.0e-77 293.9 218 61.0
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.0e-77 293.9 215 61.4
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.3e-77 292.7 215 61.4
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.3e-77 292.7 215 61.4
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.3e-77 292.7 215 61.4
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.0e-77 292.4 215 60.9
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.0e-77 292.4 217 62.2
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 4.0e-77 292.0 215 63.7
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 6.8e-77 291.2 215 62.3
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.5e-76 290.0 218 60.1
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.5e-76 290.0 202 64.9
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 2.6e-76 289.3 210 64.3
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.6e-76 289.3 215 60.9
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 2.6e-76 289.3 215 61.9
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 3.4e-76 288.9 223 59.6
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 9.8e-76 287.3 212 59.9
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.3e-75 287.0 215 61.4
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.7e-75 285.4 218 58.7
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.9e-75 285.0 216 60.6
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 4.9e-75 285.0 217 58.5
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.2e-73 280.4 180 72.8
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 2.0e-73 279.6 202 64.4
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.3e-72 276.9 222 56.8
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.3e-72 276.2 217 56.7
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.6e-70 270.0 218 58.7
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.3e-69 266.2 189 66.7
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.9e-69 264.2 185 67.0
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.2e-67 259.6 215 58.6
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.7e-67 258.8 171 71.3
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.7e-64 250.0 170 70.0
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.3e-64 249.6 170 69.4
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-64 249.6 221 55.7
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.1e-63 247.3 218 54.6
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 7.3e-63 244.6 224 57.1
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-61 240.4 169 66.9
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.3e-61 239.6 169 65.1
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.3e-61 239.6 168 66.7
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.3e-61 239.6 168 66.7
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-61 239.6 213 56.3
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 6.8e-61 238.0 151 78.1
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 8.9e-61 237.7 212 47.6
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.5e-60 234.6 136 83.8
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 2.9e-59 232.6 208 49.0
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 4.9e-59 231.9 141 75.9
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.9e-58 229.9 164 67.1
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 9.2e-58 227.6 189 58.2
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 3.9e-56 222.2 210 49.5
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 7.3e-55 218.0 142 71.8
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 3.6e-54 215.7 168 61.3
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 8.1e-54 214.5 165 62.4
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 4.0e-53 212.2 127 79.5
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.1e-50 201.4 211 49.3
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.2e-50 201.1 143 65.0
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.7e-49 199.5 211 43.6
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.0e-49 198.4 166 57.2
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.3e-48 197.2 216 42.1
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 5.6e-47 191.8 146 65.8
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.6e-47 191.8 131 69.5
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.6e-46 190.3 191 48.7
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 2.1e-46 189.9 211 41.7
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.2e-44 184.1 220 37.7
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-42 176.8 134 64.2
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-42 176.4 138 61.6
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 9.2e-42 174.5 123 66.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.2e-38 161.8 118 64.4
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.8e-37 160.2 128 64.1
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 4.4e-36 155.6 166 47.6
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 3.5e-33 146.0 101 66.3
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.7e-27 127.1 91 69.2
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 2.3e-24 116.7 76 65.8
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.5e-23 113.2 81 65.4
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-22 109.4 143 42.7
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.3e-19 100.9 130 45.4
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.4e-18 97.4 83 57.8
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.9e-18 97.1 56 75.0
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.4e-18 96.7 52 76.9
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-17 94.0 111 46.8
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.0e-11 74.7 67 52.2
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 2.2e-11 73.6 163 27.6
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 3.8e-11 72.8 102 43.1
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 5.1e-08 62.4 54 59.3
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 5.1e-08 62.4 54 59.3
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.1e-07 61.2 54 57.4
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-06 57.8 78 42.3


User provided reference genes

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