Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 4.3e-184 648.7 574 100.0
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 8.0e-130 468.4 353 73.7
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 2.1e-122 443.7 366 72.1
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 2.3e-113 413.7 255 83.1
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 8.8e-113 411.8 363 73.6
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 7.0e-110 402.1 291 76.3
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 1.7e-108 397.5 585 73.3
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 1.7e-108 397.5 370 66.5
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 5.0e-108 396.0 361 67.3
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 1.1e-107 394.8 365 66.0
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 1.9e-107 394.0 362 66.0
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 2.5e-107 393.7 365 66.6
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 9.5e-107 391.7 361 62.0
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 9.5e-107 391.7 250 80.8
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 1.6e-106 391.0 386 59.8
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 1.6e-106 391.0 362 65.5
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 1.4e-105 387.9 371 66.0
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 2.6e-104 383.6 360 66.4
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 2.6e-104 383.6 362 67.1
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 2.2e-103 380.6 365 65.5
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 6.4e-103 379.0 385 62.1
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 1.4e-102 377.9 255 77.6
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 3.2e-102 376.7 362 64.6
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 4.1e-102 376.3 360 60.8
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 7.0e-102 375.6 311 67.2
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 5.9e-101 372.5 382 62.6
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 7.8e-101 372.1 362 61.6
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 1.3e-100 371.3 380 58.9
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 1.3e-100 371.3 364 62.4
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 3.0e-100 370.2 574 67.4
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 6.6e-100 369.0 380 59.2
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 6.6e-100 369.0 363 60.9
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 6.6e-100 369.0 364 62.1
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 8.6e-100 368.6 341 65.7
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 1.1e-99 368.2 329 61.4
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 1.5e-99 367.9 359 59.9
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 3.3e-99 366.7 372 60.2
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 4.3e-99 366.3 366 61.7
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 5.6e-99 365.9 364 61.8
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 1.6e-98 364.4 362 60.5
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 2.1e-98 364.0 362 59.9
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 3.6e-98 363.2 374 58.3
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 4.7e-98 362.8 362 60.8
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 6.2e-98 362.5 370 60.5
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 6.2e-98 362.5 328 62.8
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 1.1e-97 361.7 359 63.0
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 1.4e-97 361.3 260 71.9
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 1.4e-97 361.3 591 55.7
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 4.0e-97 359.8 374 58.8
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 1.2e-96 358.2 361 62.0
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 1.5e-96 357.8 283 67.1
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 2.2e-95 354.0 361 61.8
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 2.2e-95 354.0 372 60.8
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 2.9e-95 353.6 379 58.0
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 2.9e-95 353.6 359 62.1
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 4.9e-95 352.8 361 61.2
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 8.3e-95 352.1 372 58.9
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 1.1e-94 351.7 359 58.5
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.0e-92 345.1 377 59.2
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 1.0e-92 345.1 586 63.1
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 1.5e-91 341.3 367 59.1
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 2.5e-91 340.5 563 68.0
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 2.5e-91 340.5 374 59.9
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 2.8e-90 337.0 252 67.9
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 1.8e-89 334.3 402 57.2
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 2.3e-89 334.0 362 56.9
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 2.3e-89 334.0 457 74.4
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 5.2e-89 332.8 363 57.9
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 7.5e-88 328.9 252 69.8
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 1.3e-87 328.2 380 56.8
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 1.3e-87 328.2 368 57.6
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 2.2e-87 327.4 254 70.1
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 2.9e-87 327.0 242 72.7
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 7.1e-86 322.4 322 61.2
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.7e-85 320.5 258 66.7
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.6e-85 319.7 258 66.3
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 6.0e-85 319.3 255 66.3
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 7.8e-85 318.9 258 66.7
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 5.1e-84 316.2 267 64.0
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 1.9e-83 314.3 254 65.7
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 2.5e-83 313.9 260 63.5
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 5.6e-83 312.8 371 54.4
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 7.3e-83 312.4 382 55.8
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 3.6e-82 310.1 257 64.2
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.6e-82 310.1 252 65.9
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 1.4e-81 308.1 254 64.6
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 1.4e-81 308.1 254 64.6
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 1.4e-81 308.1 283 60.1
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 3.1e-81 307.0 254 64.2
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 3.1e-81 307.0 254 64.2
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.1e-81 307.0 251 66.5
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 8.9e-81 305.4 253 63.2
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 3.4e-80 303.5 230 68.7
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 7.6e-80 302.4 254 62.2
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 1.3e-79 301.6 341 58.7
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 2.2e-79 300.8 473 66.2
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 6.4e-79 299.3 255 61.2
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 1.1e-78 298.5 232 67.7
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 2.4e-78 297.4 253 61.7
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 2.4e-78 297.4 257 63.8
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 5.4e-78 296.2 362 52.2
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 9.2e-78 295.4 254 60.6
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 4.6e-77 293.1 291 55.7
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 6.0e-77 292.7 341 58.1
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 1.0e-76 292.0 291 56.0
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 3.0e-76 290.4 252 60.3
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 3.0e-76 290.4 252 60.3
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 3.9e-76 290.0 288 55.9
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 3.9e-76 290.0 257 59.5
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 1.7e-71 274.6 291 62.5
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 1.9e-70 271.2 288 54.2
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 1.9e-70 271.2 271 57.2
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.9e-70 271.2 187 73.3
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 6.6e-68 262.7 265 57.0
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 8.7e-68 262.3 169 79.3
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 2.8e-66 257.3 173 76.9
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 8.1e-66 255.8 269 55.0
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 1.1e-65 255.4 261 54.4
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 3.1e-65 253.8 288 52.1
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 8.4e-63 245.7 366 45.9
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 5.1e-60 236.5 363 50.1
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 9.6e-59 232.3 195 62.6
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 1.6e-58 231.5 261 52.5
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 6.9e-57 226.1 267 54.3
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 7.6e-56 222.6 184 59.2
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 2.7e-53 214.2 221 54.3
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 1.5e-51 208.4 362 44.8
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 1.0e-47 195.7 157 66.2
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 1.0e-44 185.7 146 61.0
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.1e-44 183.3 164 62.8
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.1e-44 183.3 164 62.8
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.7e-44 182.6 164 62.8
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.7e-44 182.6 162 63.6
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.5e-43 181.8 164 62.2
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.5e-43 181.8 164 62.2
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.5e-43 181.8 164 62.2
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 1.9e-43 181.4 158 58.2
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.9e-43 181.4 164 62.2
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.5e-43 181.0 164 62.2
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.3e-43 180.3 164 62.2
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.7e-43 179.9 164 61.6
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.3e-42 178.7 164 61.6
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.7e-42 177.2 164 61.0
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.8e-42 176.8 164 61.6
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.1e-41 174.1 159 62.3
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 5.3e-41 173.3 182 54.4
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 1.5e-40 171.8 257 45.1
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 1.9e-38 164.9 212 51.9
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.5e-38 164.5 164 58.5
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 2.1e-37 161.4 105 71.4
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 1.9e-35 154.8 143 53.8
RcHm_v2.0_Chr3g0484401 Rosa chinensis HOM05D003639 ORTHO05D004246 1.9e-35 154.8 106 70.8
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 3.4e-32 144.1 178 51.1
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 6.5e-31 139.8 257 36.2
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.5e-30 137.9 164 51.2
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.2e-29 135.6 125 63.2
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 7.9e-29 132.9 211 47.9
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 4.1e-25 120.6 84 65.5
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 1.7e-23 115.2 77 68.8
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 2.4e-17 94.7 216 29.2
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.6e-16 92.0 173 43.9
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 2.0e-16 91.7 118 47.5
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 4.5e-16 90.5 133 42.1
Atru.chr1.1192 Acer truncatum HOM05D003639 ORTHO05D004246 7.2e-14 83.2 52 78.8
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 1.0e-12 79.3 211 33.6
Atru.chr6.1380 Acer truncatum HOM05D003639 ORTHO05D004246 1.4e-12 79.0 52 73.1
Lj4A34T49 Lonicera japonica HOM05D003639 ORTHO05D004246 6.7e-12 76.6 50 72.0
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 8.8e-12 76.3 213 33.8
BcaNung04071 Brassica carinata HOM05D003639 ORTHO05D004246 1.1e-06 59.3 54 59.3
Oeu034204.1 Olea europaea HOM05D000836 ORTHO05D000709 2.5e-06 58.2 77 45.5
QL05p082994 Quercus lobata HOM05D003639 ORTHO05D004246 4.2e-06 57.4 173 32.9
arahy.Tifrunner.gnm1.ann1.AR1CII Arachis hypogaea HOM05D000836 ORTHO05D000709 5.5e-06 57.0 77 41.6
BcaC02g12785 Brassica carinata HOM05D003639 ORTHO05D004246 7.2e-06 56.6 54 57.4
Haze_19776 Corylus avellana HOM05D003639 ORTHO05D004246 7.2e-06 56.6 65 50.8
arahy.Tifrunner.gnm1.ann1.B12291 Arachis hypogaea HOM05D000836 ORTHO05D000709 9.4e-06 56.2 77 41.6
Carub.0007s0800 Capsella rubella HOM05D000836 ORTHO05D000709 9.4e-06 56.2 77 41.6
TAR365G0060 Trochodendron aralioides HOM05D000836 ORTHO05D000709 9.4e-06 56.2 69 46.4


User provided reference genes

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