Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 1.5e-158 562.8 278 100.0
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 5.1e-114 414.8 287 71.8
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 2.7e-107 392.5 287 69.0
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 2.8e-104 382.5 286 66.4
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 7.1e-100 367.9 285 63.5
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 2.3e-98 362.8 283 64.7
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 5.1e-98 361.7 288 64.6
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 2.1e-96 356.3 288 63.9
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.8e-96 355.9 289 63.3
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.6e-96 355.5 289 63.0
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.1e-95 354.0 288 62.5
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 5.3e-95 351.7 289 63.3
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 5.3e-95 351.7 277 65.0
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 3.4e-94 349.0 288 61.5
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.8e-94 348.2 289 62.6
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.8e-93 345.5 288 61.8
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 4.9e-93 345.1 290 60.0
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 4.9e-93 345.1 278 61.9
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 1.1e-92 344.0 290 59.7
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.4e-92 343.6 287 61.0
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.4e-92 343.6 287 61.0
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.9e-92 343.2 290 60.7
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.9e-92 343.2 282 62.1
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.4e-92 342.8 289 61.6
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 4.2e-92 342.0 290 60.3
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 4.2e-92 342.0 290 60.3
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 7.1e-92 341.3 278 61.5
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 9.3e-92 340.9 287 62.0
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 9.3e-92 340.9 302 57.6
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.2e-91 340.5 288 62.2
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.6e-91 340.1 286 60.8
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 2.7e-91 339.3 283 60.8
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 2.7e-91 339.3 285 61.4
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 3.5e-91 339.0 288 59.4
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 7.9e-91 337.8 292 58.6
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 7.9e-91 337.8 280 61.8
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.3e-90 337.0 283 60.8
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.8e-90 336.7 281 59.4
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.0e-90 335.9 279 60.2
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 3.0e-90 335.9 283 61.1
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 3.9e-90 335.5 282 59.6
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 5.1e-90 335.1 281 60.5
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 2.5e-89 332.8 287 61.3
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 5.6e-89 331.6 291 58.1
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 5.6e-89 331.6 291 58.1
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 5.6e-89 331.6 293 57.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 7.4e-89 331.3 282 60.6
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 9.6e-89 330.9 301 55.8
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.3e-88 330.5 283 59.4
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 2.1e-88 329.7 316 55.7
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 2.8e-88 329.3 294 58.8
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 3.7e-88 328.9 295 56.9
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 4.8e-88 328.6 339 53.1
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 6.2e-88 328.2 293 57.3
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 8.1e-88 327.8 291 59.5
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.1e-87 327.4 290 58.6
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 4.0e-87 325.5 285 59.6
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 5.3e-87 325.1 283 61.5
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 6.9e-87 324.7 230 68.3
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 9.0e-87 324.3 252 65.5
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.2e-86 323.9 288 59.4
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 2.0e-86 323.2 285 60.7
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 4.5e-86 322.0 287 59.2
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 7.6e-86 321.2 289 57.4
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 7.6e-86 321.2 287 59.6
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 9.9e-86 320.9 293 57.0
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 1.3e-85 320.5 271 60.1
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 4.9e-85 318.5 285 57.5
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 4.9e-85 318.5 271 61.3
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 2.5e-84 316.2 297 55.9
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 3.2e-84 315.8 286 57.0
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 4.2e-84 315.5 288 57.3
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 9.3e-84 314.3 291 55.7
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 2.1e-83 313.2 286 56.3
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 3.5e-83 312.4 289 54.7
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.9e-83 311.2 266 60.9
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 7.9e-83 311.2 284 56.3
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.8e-82 310.1 286 55.9
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.8e-82 310.1 322 51.6
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 2.3e-82 309.7 285 56.5
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 6.7e-82 308.1 257 60.7
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.9e-81 306.6 264 60.2
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.5e-81 306.2 279 55.6
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.5e-81 306.2 294 54.8
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 3.3e-81 305.8 313 53.7
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 2.8e-80 302.8 283 55.8
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 8.2e-80 301.2 276 58.0
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.4e-79 300.4 281 55.9
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-78 297.4 256 60.5
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.0e-78 296.6 254 59.4
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 2.6e-78 296.2 273 58.6
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 6.5e-77 291.6 286 53.5
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 5.5e-76 288.5 219 60.7
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 7.1e-76 288.1 230 60.4
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.1e-75 286.6 262 56.1
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 2.1e-75 286.6 288 52.8
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 2.7e-75 286.2 245 61.6
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 4.6e-75 285.4 221 65.6
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.2e-72 276.6 284 52.1
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 1.2e-70 270.8 204 65.2
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.0e-69 267.7 219 62.1
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.7e-69 266.9 205 60.0
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 3.8e-69 265.8 270 52.2
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 4.2e-68 262.3 210 58.6
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 4.2e-68 262.3 237 57.4
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 2.7e-67 259.6 225 58.7
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.1e-63 246.1 294 48.6
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 5.1e-58 228.8 188 57.4
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 5.1e-58 228.8 277 46.6
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.7e-56 223.8 198 59.1
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 8.2e-56 221.5 204 57.8
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 1.2e-54 217.6 215 54.4
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 4.5e-54 215.7 204 57.4
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 6.1e-51 205.3 219 50.7
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 1.8e-50 203.8 255 42.0
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.3e-49 199.5 225 52.0
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 7.4e-49 198.4 232 50.9
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.7e-48 197.2 177 57.6
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 6.3e-48 195.3 287 42.5
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 9.1e-47 191.4 149 65.1
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 1.6e-46 190.7 265 41.5
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 6.1e-43 178.7 199 48.7
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 3.0e-42 176.4 265 44.2
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 1.5e-41 174.1 132 63.6
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 7.5e-41 171.8 287 39.7
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 6.3e-40 168.7 197 48.7
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 1.9e-36 157.1 120 59.2
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 6.1e-35 152.1 113 59.3
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 8.0e-35 151.8 105 67.6
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 2.0e-33 147.1 170 48.8
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.9e-30 135.6 138 52.9
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.7e-29 134.0 306 33.3
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 1.4e-26 124.4 218 38.1
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 5.2e-26 122.5 200 41.0
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.8e-23 114.0 86 62.8
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 5.0e-21 105.9 177 40.1
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 8.0e-19 98.6 216 34.3
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 1.6e-11 74.3 214 28.5
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 1.4e-07 61.2 46 67.4


User provided reference genes

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