Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 4.0e-277 957.6 527 100.0
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 6.7e-107 392.1 283 73.9
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 5.3e-104 382.5 283 70.7
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 9.3e-101 371.7 332 62.7
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 4.3e-98 362.8 283 69.6
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 9.0e-96 355.1 283 65.7
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 9.3e-93 345.1 282 64.5
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.6e-92 344.4 283 65.0
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 2.1e-92 344.0 283 64.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.7e-92 343.6 282 63.8
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 3.0e-91 340.1 283 64.0
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 8.7e-91 338.6 282 62.8
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.9e-90 337.4 283 64.3
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 3.3e-90 336.7 284 63.7
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 4.3e-90 336.3 278 65.1
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 9.7e-90 335.1 283 63.6
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 9.7e-90 335.1 283 63.3
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.3e-89 334.7 275 64.7
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.3e-89 334.7 274 65.3
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.6e-89 334.3 280 62.9
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 2.2e-89 334.0 283 63.3
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 4.8e-89 332.8 283 62.5
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 4.8e-89 332.8 276 63.4
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.1e-88 331.6 283 62.9
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-88 331.6 285 62.1
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-88 331.6 285 62.1
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.4e-88 331.3 278 63.3
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 2.4e-88 330.5 283 62.9
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 4.1e-88 329.7 283 61.8
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 4.1e-88 329.7 274 63.5
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 4.1e-88 329.7 283 62.9
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 4.1e-88 329.7 280 62.5
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 5.3e-88 329.3 283 62.2
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 9.0e-88 328.6 275 61.1
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.2e-87 328.2 270 64.1
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.5e-87 327.8 270 62.6
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.0e-87 327.4 283 61.5
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.0e-87 327.4 283 62.2
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.4e-87 326.6 270 62.2
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 5.9e-87 325.9 285 60.4
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.0e-86 325.1 283 61.5
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.3e-86 324.7 283 60.8
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.7e-86 324.3 282 60.3
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 3.8e-86 323.2 274 62.8
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 5.0e-86 322.8 285 60.4
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 5.0e-86 322.8 283 61.5
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 6.5e-86 322.4 285 59.6
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.1e-85 321.6 283 59.7
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 1.1e-85 321.6 283 61.5
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.9e-85 320.9 272 62.5
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.5e-85 320.5 283 60.1
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 2.5e-85 320.5 276 62.0
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 2.5e-85 320.5 284 60.2
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 3.2e-85 320.1 283 60.8
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 4.2e-85 319.7 283 59.7
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 5.5e-85 319.3 283 61.5
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 5.5e-85 319.3 280 60.7
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 7.2e-85 318.9 279 60.2
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 9.4e-85 318.5 281 60.1
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.2e-84 318.2 264 64.8
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.1e-84 317.4 275 61.5
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.7e-84 317.0 270 62.2
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.7e-84 317.0 283 59.4
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.6e-84 316.6 283 60.4
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 4.6e-84 316.2 353 52.1
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 7.9e-84 315.5 283 58.7
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.0e-83 315.1 275 60.7
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 2.3e-83 313.9 285 60.0
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.0e-83 313.5 280 61.4
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.9e-83 313.2 285 58.2
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 3.9e-83 313.2 303 57.1
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 5.1e-83 312.8 274 59.9
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 6.7e-83 312.4 272 60.3
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.5e-82 310.5 273 60.1
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 3.3e-82 310.1 285 58.6
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 3.3e-82 310.1 285 58.6
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 5.7e-82 309.3 285 57.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 9.7e-82 308.5 283 59.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.3e-81 308.1 285 58.2
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.2e-81 307.4 274 60.9
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.2e-81 307.4 308 56.2
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.8e-81 307.0 310 55.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 2.8e-81 307.0 274 60.6
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.8e-81 307.0 280 58.2
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 3.7e-81 306.6 283 59.0
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.8e-81 306.2 275 58.9
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.3e-81 305.8 273 60.1
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 6.3e-81 305.8 273 60.1
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.4e-80 304.7 285 58.6
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.8e-80 304.3 276 59.4
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 2.4e-80 303.9 285 57.9
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 6.9e-80 302.4 255 63.1
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.2e-79 301.6 255 63.1
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.5e-79 301.2 253 63.6
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.1e-77 295.0 283 57.2
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 3.2e-77 293.5 282 57.1
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.6e-76 290.0 245 64.1
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 6.1e-76 289.3 285 54.4
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.8e-75 287.7 241 63.1
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 5.1e-75 286.2 254 60.2
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 2.6e-74 283.9 256 59.4
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.6e-74 283.9 328 49.7
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 2.4e-72 277.3 253 58.1
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 6.5e-70 269.2 285 54.0
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 6.7e-67 259.2 236 58.5
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 2.0e-66 257.7 284 53.5
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.6e-63 248.1 285 50.2
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 2.9e-62 243.8 274 48.2
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 5.0e-62 243.0 219 58.4
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.9e-61 241.1 210 61.0
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 3.2e-61 240.4 213 61.5
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 2.7e-60 237.3 275 48.0
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.2e-59 233.0 152 74.3
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.1e-56 225.3 265 46.0
SalBow5G3239 Salvia bowleyana HOM05D016085 ORTHO05D005349 8.5e-54 215.7 112 96.4
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.9e-49 199.9 141 70.2
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.9e-49 199.9 141 70.2
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 7.0e-48 196.1 180 58.9
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.5e-45 188.3 126 76.2
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 4.3e-45 186.8 176 59.7
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 2.6e-42 177.6 240 42.5
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 6.4e-41 172.9 170 54.7
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 3.2e-40 170.6 168 56.0
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 4.1e-40 170.2 120 69.2
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 9.2e-40 169.1 274 35.8
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 4.6e-39 166.8 225 46.2
SalBow1G3940 Salvia bowleyana HOM05D016085 ORTHO05D005349 7.8e-39 166.0 103 84.5
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.7e-38 164.9 120 69.2
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 3.9e-38 163.7 120 68.3
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.1e-37 162.2 210 46.2
SalBow8G2528 Salvia bowleyana HOM05D016085 ORTHO05D005349 1.1e-37 162.2 98 84.7
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 8.0e-36 156.0 119 63.0
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.2e-31 142.1 274 34.3
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.5e-29 135.2 111 65.8
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 5.6e-29 133.3 128 57.0
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 7.3e-29 132.9 85 72.9
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 1.1e-27 129.0 132 51.5
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 4.4e-26 123.6 120 54.2
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.5e-26 122.9 100 63.0
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 9.8e-26 122.5 125 57.6
SalBow4G0490 Salvia bowleyana HOM05D016085 ORTHO05D005349 2.9e-25 120.9 92 75.0
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 6.4e-25 119.8 179 41.3
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.9e-21 108.2 91 56.0
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.6e-20 105.1 124 51.6
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 8.1e-20 102.8 132 47.0
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 3.1e-19 100.9 260 30.0
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 9.9e-18 95.9 100 55.0
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.7e-17 95.1 115 41.7
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 6.4e-17 93.2 71 66.2
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.7e-14 85.1 63 71.4
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 3.0e-14 84.3 64 67.2
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 3.0e-14 84.3 156 30.8
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.0e-14 84.3 63 66.7
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 7.1e-08 63.2 163 33.7
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 7.1e-08 63.2 36 80.6
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 3.9e-06 57.4 30 86.7


User provided reference genes

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