Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 0.0e+00 1597.0 832 100.0
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 0.0e+00 1130.2 762 79.1
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 0.0e+00 1090.5 755 79.2
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 0.0e+00 1081.2 759 77.5
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 1.7e-311 1072.4 736 76.9
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 8.4e-306 1053.5 754 73.7
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 4.2e-305 1051.2 754 73.2
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 1.6e-304 1049.3 787 72.2
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 9.6e-302 1040.0 759 73.3
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 5.3e-300 1034.2 755 73.4
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 9.0e-300 1033.5 708 76.6
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 2.4e-297 1025.4 757 74.2
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 3.5e-296 1021.5 759 73.6
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 4.6e-296 1021.1 758 74.4
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 7.9e-296 1020.4 810 68.8
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 7.9e-296 1020.4 749 74.1
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 1.8e-295 1019.2 755 73.5
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 8.7e-295 1016.9 758 72.6
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 8.2e-293 1010.4 759 72.1
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 4.0e-292 1008.1 758 72.4
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 1.0e-290 1003.4 760 71.1
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.7e-290 1002.7 708 75.1
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 2.9e-290 1001.9 755 70.6
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.3e-287 993.0 755 71.7
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 1.3e-287 993.0 754 70.8
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 3.0e-287 991.9 754 70.8
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 3.9e-287 991.5 762 71.3
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 1.1e-286 989.9 796 67.8
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.5e-286 989.6 755 71.8
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 1.5e-286 989.6 752 72.2
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 5.7e-286 987.6 846 66.2
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.3e-285 986.5 755 71.8
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 1.4e-284 983.0 746 72.1
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 2.0e-283 979.2 755 71.9
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 3.4e-283 978.4 754 70.0
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 5.9e-283 977.6 757 71.3
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.7e-282 976.1 755 71.4
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 1.7e-282 976.1 749 71.4
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 4.2e-281 971.5 755 70.1
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 5.5e-281 971.1 745 71.7
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 9.4e-281 970.3 762 70.1
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 1.6e-280 969.5 699 74.0
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 2.1e-280 969.1 762 69.9
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 4.6e-280 968.0 807 67.8
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 1.4e-279 966.5 730 71.2
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 3.0e-279 965.3 754 70.7
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 1.1e-278 963.4 676 74.3
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 2.5e-278 962.2 753 70.0
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 4.3e-278 961.4 701 72.2
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 4.3e-278 961.4 685 73.6
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 1.7e-277 959.5 778 69.0
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 2.8e-277 958.7 758 71.2
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 1.4e-276 956.4 681 73.4
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 5.3e-276 954.5 751 70.3
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 2.0e-275 952.6 821 64.7
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 6.5e-274 947.6 697 71.4
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 8.5e-274 947.2 643 75.7
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 8.5e-274 947.2 754 68.8
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.1e-273 946.8 750 69.1
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.2e-273 945.3 754 69.2
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 4.2e-273 944.9 677 72.8
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 7.2e-273 944.1 753 68.7
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 7.2e-273 944.1 754 69.2
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 9.4e-273 943.7 678 72.6
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.6e-272 943.0 725 68.0
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 3.9e-271 938.3 656 73.6
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 5.1e-271 937.9 679 72.6
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 8.8e-271 937.2 731 71.8
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 8.8e-271 937.2 756 68.3
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 2.6e-270 935.6 679 72.5
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 2.6e-270 935.6 614 76.5
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 5.9e-267 924.5 721 66.9
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 1.0e-266 923.7 656 75.0
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.2e-266 922.5 757 68.2
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.4e-265 919.8 687 71.3
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 1.4e-265 919.8 703 69.3
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 2.5e-265 919.1 689 71.1
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 2.1e-264 916.0 507 87.4
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.4e-263 913.3 707 73.6
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.2e-263 911.4 740 68.6
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 2.6e-262 909.1 764 67.9
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 3.3e-262 908.7 498 86.7
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 9.1e-260 900.6 708 67.7
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 9.1e-260 900.6 706 67.7
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 5.0e-258 894.8 721 65.2
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 1.4e-255 886.7 751 63.1
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 7.5e-254 880.9 728 65.5
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 6.3e-253 877.9 761 66.0
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 2.4e-252 875.9 720 64.7
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 7.5e-246 854.4 768 64.7
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 4.1e-244 848.6 472 85.2
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 9.5e-241 837.4 835 56.8
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 2.7e-235 819.3 753 62.7
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 3.3e-233 812.4 629 68.2
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.1e-228 797.3 565 75.2
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.4e-221 771.5 660 64.8
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 2.0e-214 750.0 728 56.7
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 2.0e-214 750.0 629 61.7
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.4e-212 743.8 717 57.7
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.9e-201 706.8 505 67.5
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.4e-196 690.6 409 81.2
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.8e-192 675.6 727 56.4
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.1e-183 647.9 344 89.2
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.0e-178 631.3 541 57.5
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 7.9e-171 605.1 574 63.4
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 3.3e-169 599.7 470 61.1
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 4.3e-169 599.4 470 60.4
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.6e-163 580.9 360 78.6
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 6.7e-162 575.5 574 61.5
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.7e-136 491.1 546 53.8
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 2.5e-132 477.2 502 49.0
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 8.0e-123 445.7 529 46.1
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.7e-120 436.8 255 79.6
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 3.0e-109 400.6 547 42.0
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.3e-104 385.2 511 39.9
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.3e-100 370.2 214 83.6
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 6.2e-99 366.3 450 56.9
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 2.6e-89 334.3 179 88.3
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 2.4e-87 327.8 265 66.0
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 5.1e-69 266.9 157 77.7
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 6.2e-67 260.0 387 49.9
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.0e-58 229.6 172 65.7
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.3e-52 211.1 343 43.4
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.4e-42 178.3 100 82.0
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 8.2e-35 153.3 291 43.0
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 3.1e-34 151.4 279 43.7
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.5e-31 142.5 105 70.5
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 8.0e-30 136.7 288 42.4
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.7e-25 121.7 76 84.2
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 9.4e-23 113.2 218 48.2
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 1.2e-12 79.7 104 62.5
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 5.7e-12 77.4 155 34.8
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.4e-10 70.9 302 30.5
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.2e-09 69.7 191 46.1
SalBow6G5913 Salvia bowleyana HOM05D008887 ORTHO05D006607 1.7e-08 65.9 45 66.7
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.5e-07 62.8 82 46.3
SalBow4G1962 Salvia bowleyana HOM05D008308 ORTHO05D352268 1.9e-07 62.4 41 68.3
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 4.3e-07 61.2 82 45.1
SalBow1G7688 Salvia bowleyana HOM05D008887 ORTHO05D350990 1.6e-06 59.3 46 58.7


User provided reference genes

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