Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 0.0e+00 1862.0 959 100.0
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 0.0e+00 1179.9 972 66.4
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 0.0e+00 1127.1 969 64.0
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 2.1e-300 1035.8 889 64.5
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 3.8e-270 935.3 996 55.2
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 6.6e-270 934.5 903 57.8
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 2.5e-269 932.6 997 55.1
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 1.2e-263 913.7 995 54.2
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 3.9e-262 908.7 995 53.8
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 5.0e-262 908.3 995 54.0
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 2.6e-258 896.0 861 56.9
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 7.0e-256 887.9 996 52.1
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 6.6e-254 881.3 995 52.1
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 5.6e-253 878.2 966 52.2
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.3e-251 872.8 1001 50.5
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 3.1e-251 872.5 995 50.9
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 9.8e-250 867.5 966 52.8
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 3.7e-249 865.5 1000 50.7
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 1.6e-247 860.1 990 51.7
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 6.0e-247 858.2 991 51.6
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 1.3e-246 857.1 990 51.3
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 2.5e-245 852.8 1054 48.6
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 2.1e-244 849.7 1007 51.2
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 2.8e-244 849.4 968 50.6
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 4.7e-244 848.6 986 51.2
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 5.2e-243 845.1 987 50.6
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 5.4e-240 835.1 998 49.8
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 1.5e-237 827.0 1003 50.0
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 7.3e-237 824.7 865 52.8
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 1.1e-235 820.8 946 50.6
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 2.4e-235 819.7 958 51.4
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 9.9e-234 814.3 977 50.4
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 1.1e-232 810.8 971 49.5
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.9e-232 810.1 963 49.4
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 3.2e-232 809.3 996 48.8
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 5.4e-232 808.5 968 49.9
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.2e-231 807.4 865 52.0
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 7.8e-231 804.7 951 50.5
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.0e-230 804.3 868 52.0
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 1.5e-229 800.4 1003 46.9
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 6.2e-228 795.0 960 48.2
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 6.2e-228 795.0 881 50.7
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 6.2e-228 795.0 962 49.0
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 8.1e-228 794.7 907 49.7
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.2e-226 790.8 971 48.5
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 1.2e-226 790.8 975 49.0
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 2.6e-226 789.6 862 52.3
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 5.8e-226 788.5 954 48.7
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 1.1e-224 784.3 970 47.5
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 9.3e-224 781.2 951 49.2
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.2e-223 780.8 737 57.8
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 7.9e-223 778.1 990 47.8
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 2.3e-222 776.5 973 47.8
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.5e-221 773.9 1001 46.9
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 1.9e-221 773.5 904 49.7
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 7.3e-221 771.5 864 53.0
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 1.6e-220 770.4 970 47.7
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 2.8e-220 769.6 983 48.1
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 3.4e-218 762.7 954 48.5
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 7.6e-218 761.5 945 47.6
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.3e-217 760.8 890 49.8
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 6.4e-217 758.4 890 49.6
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 8.4e-217 758.1 981 47.0
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 2.4e-216 756.5 724 58.8
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 9.3e-216 754.6 861 50.9
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 1.0e-214 751.1 969 47.0
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.0e-214 751.1 971 46.8
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 3.1e-211 739.6 971 47.1
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 6.9e-211 738.4 882 50.5
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.0e-210 736.9 999 46.0
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 3.8e-209 732.6 855 49.1
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 3.3e-205 719.5 897 48.2
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 6.3e-204 715.3 1005 44.3
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 6.3e-204 715.3 975 45.2
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 5.3e-203 712.2 862 49.1
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 7.6e-202 708.4 950 45.3
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.2e-201 706.8 965 45.3
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 5.0e-201 705.7 1001 44.4
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 4.2e-200 702.6 961 45.4
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 5.5e-200 702.2 869 48.3
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 1.2e-199 701.0 964 45.4
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.7e-199 699.9 949 44.9
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 4.6e-199 699.1 983 45.7
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 2.5e-197 693.3 968 44.7
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 1.8e-195 687.2 697 56.1
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 4.1e-195 686.0 972 43.7
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 1.2e-194 684.5 966 44.4
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 1.5e-194 684.1 978 44.4
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 2.6e-194 683.3 952 44.6
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 4.2e-192 676.0 952 44.3
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 8.8e-190 668.3 909 44.6
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 1.5e-189 667.5 990 42.1
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 1.5e-189 667.5 1005 43.2
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 4.3e-189 666.0 962 44.2
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.1e-181 641.3 895 43.8
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 4.2e-176 622.9 982 41.4
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 4.7e-175 619.4 743 49.3
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 1.0e-174 618.2 712 51.5
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.8e-171 607.4 626 53.8
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 7.5e-165 585.5 609 53.5
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 1.8e-155 554.3 953 38.7
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 7.3e-152 542.3 961 37.8
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 3.6e-151 540.0 687 48.8
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 4.4e-149 533.1 1033 36.2
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 1.9e-144 517.7 978 37.3
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 2.2e-140 504.2 800 40.8
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 3.1e-110 404.1 1042 31.0
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 4.2e-107 393.7 481 47.8
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 6.0e-90 336.7 316 54.7
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 4.8e-55 220.7 285 48.4
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 8.2e-55 219.9 575 31.3
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 3.7e-47 194.5 950 25.5
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 2.4e-46 191.8 432 32.2
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 1.8e-38 165.6 417 29.7
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 5.7e-32 144.1 143 50.3
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 1.7e-31 142.5 311 32.8
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 2.3e-28 132.1 191 46.1
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.7e-21 108.6 249 26.1
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 7.8e-21 107.1 214 29.4
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.2e-13 83.2 168 35.1
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 1.9e-11 75.9 85 50.6


User provided reference genes

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