Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 9.0e-287 989.6 504 100.0
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 2.7e-222 775.4 534 73.8
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 6.2e-219 764.2 528 73.7
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 3.6e-211 738.4 534 71.0
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 2.0e-209 732.6 534 70.8
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 2.1e-206 722.6 528 67.2
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 2.0e-193 679.5 530 67.2
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 6.0e-190 667.9 532 66.2
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 5.1e-189 664.8 527 65.3
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.1e-188 663.7 530 65.7
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 3.4e-185 652.1 527 64.7
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.9e-184 648.3 530 64.5
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 9.3e-183 644.0 533 63.6
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 1.2e-182 643.7 530 65.7
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 6.7e-181 637.9 532 64.3
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 1.1e-180 637.1 481 68.6
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 2.5e-180 636.0 532 64.3
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 1.3e-176 623.6 534 62.4
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 3.8e-176 622.1 528 61.2
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 6.7e-173 611.3 537 61.6
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 3.3e-172 609.0 534 59.9
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 5.7e-172 608.2 534 60.3
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 2.4e-170 602.8 528 59.1
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 6.9e-170 601.3 527 60.9
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 1.5e-169 600.1 528 61.9
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 4.5e-169 598.6 533 59.5
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 1.3e-168 597.0 528 58.0
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 1.3e-168 597.0 530 58.9
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 5.0e-168 595.1 534 58.4
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 6.1e-166 588.2 497 60.2
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 1.0e-165 587.4 532 59.2
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 3.9e-165 585.5 531 60.5
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.6e-163 580.1 528 58.5
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 1.1e-162 577.4 525 56.8
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.4e-162 577.0 526 56.7
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.8e-162 576.6 529 56.7
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.8e-162 576.6 529 56.7
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 4.1e-162 575.5 535 57.0
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 5.3e-162 575.1 531 58.4
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 7.7e-161 571.2 525 57.3
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 7.7e-161 571.2 525 57.3
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 2.9e-160 569.3 525 57.0
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 5.5e-159 565.1 528 56.8
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 2.7e-158 562.8 507 60.4
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 2.7e-158 562.8 525 57.5
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 3.0e-157 559.3 553 55.0
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 1.5e-156 557.0 530 55.1
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 4.4e-156 555.4 529 55.6
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 7.4e-156 554.7 529 55.6
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 9.7e-156 554.3 529 55.8
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 2.8e-155 552.7 535 56.6
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 4.8e-155 552.0 522 55.7
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 1.4e-154 550.4 526 55.5
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 1.4e-154 550.4 553 54.2
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 6.9e-154 548.1 528 55.9
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 6.9e-154 548.1 522 55.0
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 9.1e-154 547.7 531 55.9
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 2.0e-153 546.6 535 55.9
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 2.0e-153 546.6 533 55.0
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 1.3e-152 543.9 532 53.9
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 2.2e-152 543.1 526 54.9
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.9e-152 542.7 531 55.4
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 2.5e-151 539.7 531 53.1
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 2.7e-150 536.2 534 53.7
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 3.6e-150 535.8 554 53.1
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 3.6e-150 535.8 533 53.3
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 3.6e-150 535.8 533 53.3
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 7.9e-150 534.6 533 54.4
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.0e-148 530.0 499 56.5
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 2.0e-148 530.0 503 56.9
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 3.3e-148 529.3 533 54.6
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 5.7e-148 528.5 533 54.8
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 7.4e-148 528.1 532 52.3
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 2.8e-147 526.2 533 52.7
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 1.1e-146 524.2 530 53.2
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 1.4e-146 523.9 533 54.2
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 1.4e-146 523.9 529 52.6
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 1.8e-146 523.5 529 52.6
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 5.3e-146 521.9 529 52.2
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 5.3e-146 521.9 549 53.0
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 2.6e-145 519.6 533 52.2
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 1.0e-144 517.7 534 52.8
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 2.9e-144 516.2 537 53.8
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 3.8e-144 515.8 533 52.0
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 6.5e-144 515.0 532 52.3
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 8.5e-144 514.6 533 52.2
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 1.0e-141 507.7 551 52.1
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 4.0e-141 505.8 553 50.6
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 6.7e-141 505.0 554 50.9
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 9.7e-140 501.1 509 56.0
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 1.4e-138 497.3 531 52.2
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 2.4e-138 496.5 553 50.5
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 7.0e-138 495.0 533 51.0
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 7.0e-138 495.0 531 51.8
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 6.5e-136 488.4 531 51.2
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.2e-135 485.7 527 51.8
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 1.2e-134 484.2 522 51.5
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 3.1e-130 469.5 527 50.3
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 1.6e-129 467.2 340 66.8
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 1.9e-127 460.3 540 49.1
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 4.7e-126 455.7 531 49.2
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 7.5e-124 448.4 529 48.2
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 1.8e-122 443.7 528 50.6
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.0e-121 440.3 528 47.5
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 2.1e-118 430.3 527 48.8
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 2.3e-117 426.8 530 46.2
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 5.2e-117 425.6 476 51.1
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 3.6e-86 323.2 391 48.3
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 5.2e-85 319.3 521 37.4
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 1.4e-82 311.2 388 46.9
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 6.6e-80 302.4 338 47.3
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 1.5e-79 301.2 521 37.8
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 1.6e-78 297.7 532 35.5
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 5.3e-77 292.7 274 55.1
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 2.1e-73 280.8 178 82.6
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 1.9e-71 274.2 503 38.4
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.5e-68 264.6 336 46.4
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 3.4e-68 263.5 528 32.8
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 7.6e-68 262.3 513 34.1
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 2.6e-60 237.3 413 35.6
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 4.8e-46 189.9 222 50.9
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.4e-45 188.3 336 36.9
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 8.5e-43 179.1 235 45.5
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 2.7e-41 174.1 133 66.9
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.3e-35 155.2 100 73.0
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.0e-31 141.4 500 27.8
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 2.6e-28 131.0 100 68.0
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 8.0e-25 119.4 113 50.4
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.0e-24 119.0 89 67.4
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 4.0e-24 117.1 115 59.1
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 5.7e-23 113.2 112 54.5
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 4.8e-22 110.2 89 64.0
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 4.5e-20 103.6 156 43.6
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 1.1e-18 99.0 155 42.6
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 4.0e-16 90.5 70 65.7
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 9.1e-13 79.3 55 69.1
ATR0693G369 Amborella trichopoda HOM05D005151 ORTHO05D006322 8.0e-09 66.2 161 32.9
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 2.3e-08 64.7 70 42.9
CBR_g31026 Chara braunii HOM05D005544 ORTHO05D007303 4.0e-08 63.9 263 28.5
Rhsim03G0230900 Rhododendron simsii HOM05D005151 ORTHO05D006322 4.0e-08 63.9 208 28.8
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.2e-07 62.4 183 27.3
CDE02G2231 Ceratophyllum demersum HOM05D003081 ORTHO05D003627 1.5e-07 62.0 127 29.9
Aqoxy3G01296 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 2.6e-07 61.2 177 28.2
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 2.6e-07 61.2 261 23.4
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 4.4e-07 60.5 246 24.8
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 7.5e-07 59.7 218 25.2
PSO210G2378 Papaver somniferum HOM05D003081 ORTHO05D003627 7.5e-07 59.7 127 29.9
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 1.3e-06 58.9 256 25.4
PSO210G6215 Papaver somniferum HOM05D003081 ORTHO05D003627 1.3e-06 58.9 127 29.9
BraA09t42138Z Brassica rapa HOM05D003081 ORTHO05D003627 1.7e-06 58.5 140 28.6
Pp3c15_21840 Physcomitrium patens HOM05D004386 ORTHO05D005247 1.7e-06 58.5 252 23.4
SEGI_25213 Sequoiadendron giganteum HOM05D000526 ORTHO05D000956 1.7e-06 58.5 156 26.3
SEGI_34056 Sequoiadendron giganteum HOM05D000526 ORTHO05D000956 1.7e-06 58.5 156 26.3
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 2.2e-06 58.2 218 25.2
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 2.2e-06 58.2 246 24.4
Zm00001eb420250 Zea mays HOM05D003081 ORTHO05D003627 2.2e-06 58.2 128 28.1
Atru.chr4.1857 Acer truncatum HOM05D003081 ORTHO05D003627 3.7e-06 57.4 138 29.0
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 3.7e-06 57.4 249 24.5
Cre06.g255400 Chlamydomonas reinhardtii HOM05D005323 ORTHO05D006820 3.7e-06 57.4 163 30.1
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 3.7e-06 57.4 251 22.7
GSVIVG01001859001 Vitis vinifera HOM05D003081 ORTHO05D003627 3.7e-06 57.4 127 29.9
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 4.9e-06 57.0 246 25.6
BraA09t37673Z Brassica rapa HOM05D003081 ORTHO05D001585 4.9e-06 57.0 152 28.9
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 4.9e-06 57.0 92 41.3
Prupe.8G212400 Prunus persica HOM05D003081 ORTHO05D003627 4.9e-06 57.0 131 28.2
C08p52470 Brassica napus HOM05D003081 ORTHO05D003627 6.3e-06 56.6 128 28.1
BolC8t52774H Brassica oleracea HOM05D003081 ORTHO05D003627 6.3e-06 56.6 139 28.8
BraA08t35609Z Brassica rapa HOM05D003081 ORTHO05D003627 6.3e-06 56.6 141 28.4
Cfa003042 Carpinus fangiana HOM05D005151 ORTHO05D006322 6.3e-06 56.6 132 32.6
Haze_11515 Corylus avellana HOM05D003081 ORTHO05D003627 6.3e-06 56.6 134 27.6
Haze_11521 Corylus avellana HOM05D003081 ORTHO05D003627 6.3e-06 56.6 134 27.6
Hma1.2p1_0736F.1_g210710 Hydrangea macrophylla HOM05D000836 ORTHO05D000709 6.3e-06 56.6 192 25.5
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 8.3e-06 56.2 218 24.8
Dinv35611 Davidia involucrata HOM05D000645 ORTHO05D000494 8.3e-06 56.2 218 23.9
Gohir.D07G159700 Gossypium hirsutum HOM05D003081 ORTHO05D003627 8.3e-06 56.2 134 28.4


User provided reference genes

Program Settings